update to allow ngs-bam to be compiled in one pass

2 files changed, 5 insertions, 2 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 9658a5cc7f1b..40f4b0d7d0f5 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,5 +1,3 @@
-# Generated by mksrcinfo v8
-# Fri Jan 29 22:47:08 UTC 2016
 pkgbase = ngs
 	pkgdesc = A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.
 	pkgver = 1.2.3
diff --git a/PKGBUILD b/PKGBUILD
index 3bc424613f71..5de7c4fa56ae 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -26,6 +26,11 @@ build(){
   cd "ngs-java"
   ./configure --prefix="$pkgdir/usr/"
   cd ".."
+  make || echo "hack: cannot configure ngs-bam until the rest is compiled; but make fails because ngs-bam is not configured"
+
+  cd "ngs-bam"
+  ./configure --prefix="$pkgdir/usr/"
+  cd ".."
   make
 }