Initial import

4 files changed, 89 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..757285d19f55
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,28 @@
+pkgbase = openms
+	pkgdesc = C++ library and tools for LC/MS data management and analyses
+	pkgver = 2.0.0
+	pkgrel = 2
+	url = http://open-ms.sourceforge.net/
+	arch = i686
+	arch = x86_64
+	license = BSD
+	makedepends = cmake
+	depends = boost
+	depends = libsvm
+	depends = glpk
+	depends = xerces-c
+	depends = qtwebkit
+	depends = eigen
+	optdepends = dot2tex: Create package documentation during compilation
+	optdepends = texlive-core: Create package documentation during compilation
+	optdepends = texlive-latexextra: Create package documentation during compilation
+	optdepends = doxygen: Create package documentation during compilation
+	source = http://download.sourceforge.net/project/open-ms/OpenMS/OpenMS-2.0/OpenMS-2.0.0_src.tar.gz
+	source = OpenMS-TOPPView.desktop
+	source = OpenMS-TOPPAS.desktop
+	sha256sums = 957bbb28bf484b9e288986c103109298f9aeac8e4d5e68b8b58ac2e365d7ab3d
+	sha256sums = 76fab06730720c786a0b874ba6bb8b85adae85b11dde9c68c35a0d3e76d7f049
+	sha256sums = ba63c4aa90b1c055141cb0ef5bd199e390912595e7fdb8d30e9bb777f189ca30
+
+pkgname = openms
+
diff --git a/OpenMS-TOPPAS.desktop b/OpenMS-TOPPAS.desktop
new file mode 100755
index 000000000000..8ebb76cedc99
--- /dev/null
+++ b/OpenMS-TOPPAS.desktop
@@ -0,0 +1,10 @@
+[Desktop Entry]
+Name=OpenMS-TOPPAS
+GenericName=
+Comment=Software for LC-MS data management and analyses
+Exec=TOPPAS
+Icon=applications-science
+Terminal=false
+Type=Application
+Categories=Science;
+StartupNotify=false
\ No newline at end of file
diff --git a/OpenMS-TOPPView.desktop b/OpenMS-TOPPView.desktop
new file mode 100755
index 000000000000..0d2c21c99c65
--- /dev/null
+++ b/OpenMS-TOPPView.desktop
@@ -0,0 +1,10 @@
+[Desktop Entry]
+Name=OpenMS-TOPPView
+GenericName=
+Comment=Software for LC-MS data management and analyses
+Exec=TOPPView
+Icon=applications-science
+Terminal=false
+Type=Application
+Categories=Science;
+StartupNotify=false
\ No newline at end of file
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100755
index 000000000000..165237a2e0a2
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,41 @@
+ # Maintainer: saxonbeta <saxonbeta at gmail dot com>
+pkgname=openms
+_pkgname=OpenMS
+pkgver=2.0.0
+pkgrel=2
+pkgdesc="C++ library and tools for LC/MS data management and analyses"
+arch=('i686' 'x86_64')
+url="http://open-ms.sourceforge.net/"
+license=('BSD')
+depends=('boost' 'libsvm' 'glpk' 'xerces-c' 'qtwebkit' 'eigen')
+makedepends=('cmake')
+optdepends=('dot2tex: Create package documentation during compilation'
+	    'texlive-core: Create package documentation during compilation'
+	    'texlive-latexextra: Create package documentation during compilation'
+	    'doxygen: Create package documentation during compilation')
+source=("http://download.sourceforge.net/project/open-ms/${_pkgname}/${_pkgname}-2.0/${_pkgname}-${pkgver}_src.tar.gz"
+        'OpenMS-TOPPView.desktop' 'OpenMS-TOPPAS.desktop')
+sha256sums=('957bbb28bf484b9e288986c103109298f9aeac8e4d5e68b8b58ac2e365d7ab3d'
+	    '76fab06730720c786a0b874ba6bb8b85adae85b11dde9c68c35a0d3e76d7f049'
+	    'ba63c4aa90b1c055141cb0ef5bd199e390912595e7fdb8d30e9bb777f189ca30')
+
+	    
+
+
+build() {
+  cd "$srcdir/$_pkgname-$pkgver"
+  cd contrib
+  cmake -DBUILD_TYPE=WILDMAGIC
+  cmake -DBUILD_TYPE=SEQAN
+  cd ..
+  cmake -DBOOST_USE_STATIC=OFF -DINSTALL_PREFIX=/usr -DCMAKE_FIND_ROOT_PATH=/usr -DCMAKE_INSTALL_PREFIX=/usr
+  make
+}
+
+package() {
+  cd "$srcdir/$_pkgname-$pkgver"
+  make DESTDIR="$pkgdir/" install
+  install -D -m644 LICENSE "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+  install -D -m644 $srcdir/OpenMS-TOPPView.desktop ${pkgdir}/usr/share/applications/OpenMS-TOPPView.desktop
+  install -D -m644 $srcdir/OpenMS-TOPPAS.desktop ${pkgdir}/usr/share/applications/OpenMS-TOPPAS.desktop
+}
\ No newline at end of file