Initial import

2 files changed, 59 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..d31ced9003bc
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,16 @@
+pkgbase = phast
+	pkgdesc = Phylogenetic analysis with space/time models
+	pkgver = 1.3
+	pkgrel = 1
+	url = http://compgen.bscb.cornell.edu/phast
+	arch = i686
+	arch = x86_64
+	license = BSD
+	makedepends = cmake
+	source = http://www.netlib.org/clapack/clapack-3.2.1-CMAKE.tgz
+	source = http://compgen.bscb.cornell.edu/phast/downloads/phast.v1_3.tgz
+	sha1sums = 5ea1bcc4314e392bca8b9e5f61d44355cf9f4cc1
+	sha1sums = 2e5fcecb39e3efb822e30538739a159b864a7238
+
+pkgname = phast
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..03a6f8027dcd
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,43 @@
+# Maintainer: Charles Vejnar <ce@vejnar.org>
+
+pkgname=phast
+pkgver=1.3
+pkgrel=1
+pkgdesc="Phylogenetic analysis with space/time models"
+arch=("i686" "x86_64")
+url="http://compgen.bscb.cornell.edu/phast"
+license=("BSD")
+makedepends=("cmake")
+source=("http://www.netlib.org/clapack/clapack-3.2.1-CMAKE.tgz" "http://compgen.bscb.cornell.edu/phast/downloads/phast.v${pkgver//./_}.tgz")
+sha1sums=("5ea1bcc4314e392bca8b9e5f61d44355cf9f4cc1" "2e5fcecb39e3efb822e30538739a159b864a7238")
+
+build() {
+    # Building CLAPACK
+    cd "$srcdir/clapack-3.2.1-CMAKE"
+    mkdir build
+    cd build
+    cmake ..
+    make
+
+    # Adding symbolic links
+    ln -s ./BLAS/SRC/libblas.a blas.a
+    ln -s ./SRC/liblapack.a lapack.a
+    ln -s ./TESTING/MATGEN/libtmglib.a tmglib.a
+    ln -s ./libf2c/libf2c.a F2CLIBS/libf2c.a
+    cp -r ../INCLUDE .
+
+    # Building Phast
+    cd "$srcdir/phast-$pkgver/src"
+    make CLAPACKPATH=$srcdir/clapack-3.2.1-CMAKE/build
+}
+
+package() {
+    cd "$srcdir/phast-$pkgver/bin"
+    for fname in $(ls -1); do
+        install -Dm755 $fname "$pkgdir/usr/bin/$fname"
+    done
+    cd "$srcdir/phast-$pkgver/doc/man"
+    for fname in $(ls -1); do
+        install -Dm644 $fname "$pkgdir/usr/share/man/man1/$fname"
+    done
+}