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authorChristian Krause2016-08-10 09:12:13 +0200
committerChristian Krause2016-08-10 09:12:13 +0200
commitac91dd98944765826212394b0fc86adae37a102d (patch)
treeff37eb9e787eb2530b9bf1d28b4bcfdf2cf99fa9
parentc972da407b7e5e63e88557ea09525d9ea81a11a7 (diff)
downloadaur-ac91dd98944765826212394b0fc86adae37a102d.tar.gz
picard-tools-2.6.0-1
-rw-r--r--.SRCINFO9
-rw-r--r--PKGBUILD18
2 files changed, 12 insertions, 15 deletions
diff --git a/.SRCINFO b/.SRCINFO
index bf06c6600300..0d65f804b7da 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,18 +1,19 @@
# Generated by mksrcinfo v8
-# Mon Jul 4 11:18:31 UTC 2016
+# Wed Aug 10 07:11:47 UTC 2016
pkgbase = picard-tools
pkgdesc = set of tools for working with next generation sequencing data in the BAM format
- pkgver = 2.5.0
+ pkgver = 2.6.0
pkgrel = 1
url = https://github.com/broadinstitute/picard
arch = any
license = GPL2
depends = bash
depends = java-runtime>=8
- source = https://github.com/broadinstitute/picard/releases/download/2.5.0/picard-tools-2.5.0.zip
+ noextract = picard-2.6.0.jar
+ source = picard-2.6.0.jar::https://github.com/broadinstitute/picard/releases/download/2.6.0/picard.jar
source = picard-profile.sh
source = picard.sh
- md5sums = 0b9e2c9dc0043b5f8ef7b8f9b39780ae
+ md5sums = 91f35f22977d9692ce2718270077dc50
md5sums = ebcda2d2c55df6d05994252cf22a68c2
md5sums = 0987aa56f62f5e843bfa788cc93626c8
diff --git a/PKGBUILD b/PKGBUILD
index 463ae2aea905..d131d4798019 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,27 +1,23 @@
# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
pkgname=picard-tools
-pkgver=2.5.0
+pkgver=2.6.0
pkgrel=1
pkgdesc='set of tools for working with next generation sequencing data in the BAM format'
arch=('any')
url="https://github.com/broadinstitute/picard"
license=('GPL2')
depends=('bash' 'java-runtime>=8')
-source=("https://github.com/broadinstitute/picard/releases/download/$pkgver/$pkgname-$pkgver.zip"
+source=("picard-$pkgver.jar::https://github.com/broadinstitute/picard/releases/download/$pkgver/picard.jar"
'picard-profile.sh'
'picard.sh')
-md5sums=('0b9e2c9dc0043b5f8ef7b8f9b39780ae'
+noextract=("picard-$pkgver.jar")
+md5sums=('91f35f22977d9692ce2718270077dc50'
'ebcda2d2c55df6d05994252cf22a68c2'
'0987aa56f62f5e843bfa788cc93626c8')
package() {
- cd $srcdir/$pkgname-$pkgver
-
- for f in *.jar ; do
- install -Dm755 $f $pkgdir/usr/share/java/picard-tools/$f
- done
-
- install -Dm755 $srcdir/picard.sh $pkgdir/usr/bin/picard
- install -Dm755 $srcdir/picard-profile.sh $pkgdir/etc/profile.d/picard.sh
+ install -Dm755 $srcdir/picard-profile.sh $pkgdir/etc/profile.d/picard.sh
+ install -Dm755 $srcdir/picard.sh $pkgdir/usr/bin/picard
+ install -Dm755 $srcdir/picard-$pkgver.jar $pkgdir/usr/share/java/picard-tools/picard.jar
}