diff options
author | Christian Krause | 2016-08-10 09:12:13 +0200 |
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committer | Christian Krause | 2016-08-10 09:12:13 +0200 |
commit | ac91dd98944765826212394b0fc86adae37a102d (patch) | |
tree | ff37eb9e787eb2530b9bf1d28b4bcfdf2cf99fa9 | |
parent | c972da407b7e5e63e88557ea09525d9ea81a11a7 (diff) | |
download | aur-ac91dd98944765826212394b0fc86adae37a102d.tar.gz |
picard-tools-2.6.0-1
-rw-r--r-- | .SRCINFO | 9 | ||||
-rw-r--r-- | PKGBUILD | 18 |
2 files changed, 12 insertions, 15 deletions
@@ -1,18 +1,19 @@ # Generated by mksrcinfo v8 -# Mon Jul 4 11:18:31 UTC 2016 +# Wed Aug 10 07:11:47 UTC 2016 pkgbase = picard-tools pkgdesc = set of tools for working with next generation sequencing data in the BAM format - pkgver = 2.5.0 + pkgver = 2.6.0 pkgrel = 1 url = https://github.com/broadinstitute/picard arch = any license = GPL2 depends = bash depends = java-runtime>=8 - source = https://github.com/broadinstitute/picard/releases/download/2.5.0/picard-tools-2.5.0.zip + noextract = picard-2.6.0.jar + source = picard-2.6.0.jar::https://github.com/broadinstitute/picard/releases/download/2.6.0/picard.jar source = picard-profile.sh source = picard.sh - md5sums = 0b9e2c9dc0043b5f8ef7b8f9b39780ae + md5sums = 91f35f22977d9692ce2718270077dc50 md5sums = ebcda2d2c55df6d05994252cf22a68c2 md5sums = 0987aa56f62f5e843bfa788cc93626c8 @@ -1,27 +1,23 @@ # Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> pkgname=picard-tools -pkgver=2.5.0 +pkgver=2.6.0 pkgrel=1 pkgdesc='set of tools for working with next generation sequencing data in the BAM format' arch=('any') url="https://github.com/broadinstitute/picard" license=('GPL2') depends=('bash' 'java-runtime>=8') -source=("https://github.com/broadinstitute/picard/releases/download/$pkgver/$pkgname-$pkgver.zip" +source=("picard-$pkgver.jar::https://github.com/broadinstitute/picard/releases/download/$pkgver/picard.jar" 'picard-profile.sh' 'picard.sh') -md5sums=('0b9e2c9dc0043b5f8ef7b8f9b39780ae' +noextract=("picard-$pkgver.jar") +md5sums=('91f35f22977d9692ce2718270077dc50' 'ebcda2d2c55df6d05994252cf22a68c2' '0987aa56f62f5e843bfa788cc93626c8') package() { - cd $srcdir/$pkgname-$pkgver - - for f in *.jar ; do - install -Dm755 $f $pkgdir/usr/share/java/picard-tools/$f - done - - install -Dm755 $srcdir/picard.sh $pkgdir/usr/bin/picard - install -Dm755 $srcdir/picard-profile.sh $pkgdir/etc/profile.d/picard.sh + install -Dm755 $srcdir/picard-profile.sh $pkgdir/etc/profile.d/picard.sh + install -Dm755 $srcdir/picard.sh $pkgdir/usr/bin/picard + install -Dm755 $srcdir/picard-$pkgver.jar $pkgdir/usr/share/java/picard-tools/picard.jar } |