initial commit

4 files changed, 327 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..d9c0b9759e34
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,23 @@
+pkgbase = python-eutils
+	pkgdesc = Structured Python interface to NCBI E-Utilities.
+	pkgver = 0.4.1
+	pkgrel = 00
+	url = https://github.com/biocommons/eutils
+	arch = any
+	license = Apache
+	makedepends = python-pip
+	depends = python
+	depends = python-pytz
+	depends = python-requests
+	depends = python-lxml
+	depends = python-six
+	noextract = eutils-0.4.1-py2.py3-none-any.whl
+	source = PKGBUILD_EXTRAS
+	source = https://files.pythonhosted.org/packages/05/25/226ee093ebe2533ed4f0be25896607ab3afce0de824293ddf8d2bc3d8621/eutils-0.4.1-py2.py3-none-any.whl
+	source = LICENSE
+	md5sums = SKIP
+	md5sums = b0f9ad9c86c5f4f46c9946ca94546cec
+	md5sums = e3fc50a88d0a364313df4b21ef20c29e
+
+pkgname = python-eutils
+
diff --git a/LICENSE b/LICENSE
new file mode 100644
index 000000000000..8dada3edaf50
--- /dev/null
+++ b/LICENSE
@@ -0,0 +1,201 @@
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
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+   1. Definitions.
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diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..5860719d4379
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,103 @@
+# Maintainer: Moritz Schaefer
+
+export PIP_CONFIG_FILE=/dev/null
+export PIP_DISABLE_PIP_VERSION_CHECK=true
+
+pkgname=python-eutils
+epoch=
+pkgver=0.4.1
+pkgrel=00
+pkgdesc='Structured Python interface to NCBI E-Utilities.'
+arch=(any)
+url=https://github.com/biocommons/eutils
+license=(Apache)
+depends=(python python-pytz python-requests python-lxml python-six)
+## EXTRA_DEPENDS ##
+makedepends=(python-pip)
+checkdepends=()
+provides=()
+conflicts=(${provides%=*})  # No quotes, to avoid an empty entry.
+source=(PKGBUILD_EXTRAS)
+md5sums=(SKIP)
+source+=(https://files.pythonhosted.org/packages/05/25/226ee093ebe2533ed4f0be25896607ab3afce0de824293ddf8d2bc3d8621/eutils-0.4.1-py2.py3-none-any.whl)
+md5sums+=(b0f9ad9c86c5f4f46c9946ca94546cec)
+noextract=(eutils-0.4.1-py2.py3-none-any.whl)
+source+=(LICENSE)
+md5sums+=(e3fc50a88d0a364313df4b21ef20c29e)
+_first_source() {
+    echo " ${source_i686[@]} ${source_x86_64[@]} ${source[@]}" |
+        tr ' ' '\n' | grep -Pv '^(PKGBUILD_EXTRAS)?$' | head -1
+}
+
+if [[ $(_first_source) =~ ^git+ ]]; then
+    provides+=("${pkgname%-git}")
+    conflicts+=("${pkgname%-git}")
+fi
+
+_is_wheel() {
+    [[ $(_first_source) =~ \.whl$ ]]
+}
+
+_dist_name() {
+    basename "$(_first_source)" |
+      sed 's/\(\.tar\.gz\|\.tgz\|\.tar\.bz2\|\.zip\|\.git\)$//'
+}
+
+if [[ $(_first_source) =~ ^git+ ]]; then
+    _pkgver() {
+        ( set -o pipefail
+          cd "$srcdir/$(_dist_name)"
+          git describe --long --tags 2>/dev/null |
+            sed 's/^v//;s/\([^-]*-g\)/r\1/;s/-/./g' ||
+          printf "r%s.%s" \
+              "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)"
+        )
+    }
+
+    pkgver() { _pkgver; }
+fi
+
+_build() {
+    if _is_wheel; then return; fi
+    cd "$srcdir/$(_dist_name)"
+    # See Arch Wiki/PKGBUILD/license.
+    # Get the first filename that matches.
+    local test_name
+    if [[ ${license[0]} =~ ^(BSD|MIT|ZLIB|Python)$ ]]; then
+        for test_name in LICENSE LICENSE.txt license.txt COPYING COPYING.md COPYING.rst COPYING.txt COPYRIGHT; do
+            if cp "$srcdir/$(_dist_name)/$test_name" "$srcdir/LICENSE" 2>/dev/null; then
+                break
+            fi
+        done
+    fi
+    # Build the wheel (which we allow to fail) only after fetching the license.
+    /usr/bin/pip wheel -v --no-deps --wheel-dir="$srcdir" \
+        --global-option=--no-user-cfg \
+        --global-option=build --global-option=-j"$(nproc)" . ||
+        true
+}
+
+build() { _build; }
+
+_check() {
+    # Define check(), possibly using _check as a helper, to run the tests.
+    # You may need to call `python setup.py build_ext -i` first.
+    if _is_wheel; then return; fi
+    cd "$srcdir/$(_dist_name)"
+    /usr/bin/python setup.py -q test
+}
+
+_package() {
+    cd "$srcdir"
+    # pypa/pip#3063: pip always checks for a globally installed version.
+    /usr/bin/pip --quiet install --root="$pkgdir" \
+        --no-deps --ignore-installed --no-warn-script-location \
+        "$(ls ./*.whl 2>/dev/null || echo ./"$(_dist_name)")"
+    if [[ -f LICENSE ]]; then
+        install -D -m644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
+    fi
+}
+
+package() { _package; }
+
+. "$(dirname "$BASH_SOURCE")/PKGBUILD_EXTRAS"
diff --git a/PKGBUILD_EXTRAS b/PKGBUILD_EXTRAS
new file mode 100644
index 000000000000..e69de29bb2d1
--- /dev/null
+++ b/PKGBUILD_EXTRAS