diff options
| author | clintval | 2018-01-20 15:19:37 -0800 |
|---|---|---|
| committer | clintval | 2018-01-20 15:19:37 -0800 |
| commit | 66e5c4a0c02c12de1ad6a9934a800c4a175bae51 (patch) | |
| tree | 8063ef927780eac85cd2a3132a5ba8a30e3516ee | |
| parent | 07f8cb6b6d09483862ec78f5435098377d63d502 (diff) | |
| download | aur-66e5c4a0c02c12de1ad6a9934a800c4a175bae51.tar.gz | |
python-gffutils to split package
| -rw-r--r-- | .SRCINFO | 29 | ||||
| -rw-r--r-- | PKGBUILD | 83 |
2 files changed, 85 insertions, 27 deletions
@@ -1,22 +1,37 @@ pkgbase = python-gffutils - pkgdesc = GFF and GTF file manipulation and interconversion + pkgdesc = GFF and GTF file manipulation and interconversion in Python pkgver = 0.9 - pkgrel = 1 - url = https://github.com/daler/gffutils + pkgrel = 2 + url = https://pypi.python.org/pypi/gffutils arch = any license = MIT + makedepends = python makedepends = python-setuptools + makedepends = python2 + makedepends = python2-setuptools + options = !emptydirs + source = python-gffutils-0.9.tar.gz::https://pypi.python.org/packages/b4/ea/54ca403a8d471849606fb432b9afcf73c8c5105ea2dd87b8d38bd5217c5a/gffutils-0.9.tar.gz + sha256sums = e1b0bf2b422ec3491be13d77bf7baf71d274abd844e8f8b6c1217a95b236218b + +pkgname = python-gffutils depends = python depends = python-argcomplete depends = python-argh depends = python-pyfaidx depends = python-simplejson depends = python-six - optdepends = python-biopython: for sequence manipulation optdepends = bedtools: for genomic interval arithemtic + optdepends = python-biopython: for sequence manipulation optdepends = python-pybedtools: wrapper for bedtools - source = https://github.com/daler/gffutils/archive/v0.9.tar.gz - md5sums = 819e44d2995175d6b0e575ecf07fc50f -pkgname = python-gffutils +pkgname = python2-gffutils + depends = python2 + depends = python2-argcomplete + depends = python2-argh + depends = python2-pyfaidx + depends = python2-simplejson + depends = python2-six + optdepends = bedtools: for genomic interval arithemtic + optdepends = python2-biopython: for sequence manipulation + optdepends = python2-pybedtools: wrapper for bedtools @@ -1,29 +1,72 @@ # Maintainer: Clint Valentine <valentine.clint@gmail.com> -pkgname='python-gffutils' +_name=gffutils +pkgbase='python-gffutils' +pkgname=('python-gffutils' 'python2-gffutils') pkgver=0.9 -pkgrel=1 -pkgdesc="GFF and GTF file manipulation and interconversion" +pkgrel=2 +pkgdesc="GFF and GTF file manipulation and interconversion in Python" arch=('any') -url="https://github.com/daler/gffutils" +url="https://pypi.python.org/pypi/gffutils" license=('MIT') -depends=( - 'python' - 'python-argcomplete' - 'python-argh' - 'python-pyfaidx' - 'python-simplejson' - 'python-six') -optdepends=( - 'python-biopython: for sequence manipulation' - 'bedtools: for genomic interval arithemtic' - 'python-pybedtools: wrapper for bedtools') -makedepends=('python-setuptools') -ptions=(!emptydirs) -source=("https://github.com/daler/gffutils/archive/v${pkgver}.tar.gz") -md5sums=('819e44d2995175d6b0e575ecf07fc50f') +makedepends=( + 'python' 'python-setuptools' + 'python2' 'python2-setuptools') +options=(!emptydirs) +source=("${pkgname}"-"${pkgver}".tar.gz::https://pypi.python.org/packages/b4/ea/54ca403a8d471849606fb432b9afcf73c8c5105ea2dd87b8d38bd5217c5a/gffutils-0.9.tar.gz) +sha256sums=('e1b0bf2b422ec3491be13d77bf7baf71d274abd844e8f8b6c1217a95b236218b') + +prepare() { + cp -a "${_name}"-"${pkgver}"{,-py2} +} package() { - cd "${srcdir}/gffutils-${pkgver}" + cd "${srcdir}"/"${_name}"-"${pkgver}" python setup.py install --root="${pkgdir}/" --optimize=1 } + +build(){ + cd "${srcdir}"/"${_name}"-"${pkgver}" + python setup.py build + + cd "${srcdir}"/"${_name}"-"${pkgver}"-py2 + python2 setup.py build +} + +package_python2-gffutils() { + depends=( + 'python2' + 'python2-argcomplete' + 'python2-argh' + 'python2-pyfaidx' + 'python2-simplejson' + 'python2-six') + optdepends=( + 'bedtools: for genomic interval arithemtic' + 'python2-biopython: for sequence manipulation' + 'python2-pybedtools: wrapper for bedtools') + + cd "${_name}"-"${pkgver}"-py2 + python2 setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build + install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"/COPYING + + mv "${pkgdir}"/usr/bin/"${_name}"-cli "${pkgdir}"/usr/bin/"${_name}"-cli2 +} + +package_python-gffutils() { + depends=( + 'python' + 'python-argcomplete' + 'python-argh' + 'python-pyfaidx' + 'python-simplejson' + 'python-six') + optdepends=( + 'bedtools: for genomic interval arithemtic' + 'python-biopython: for sequence manipulation' + 'python-pybedtools: wrapper for bedtools') + + cd "${_name}"-"${pkgver}" + python setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build + install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"/COPYING +} |