python-pybedtools to split package

2 files changed, 88 insertions, 26 deletions

diff --git a/.SRCINFO b/.SRCINFO
index e861fcd1dcdc..71008f577d45 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,13 +1,21 @@
 pkgbase = python-pybedtools
-	pkgdesc = Python wrapper for Aaron Quinlan's bedtools.
+	pkgdesc = Python wrapper for the bioinformatics genomic arithmetic tool bedtools
 	pkgver = 0.7.10
-	pkgrel = 2
-	url = http://daler.github.io/pybedtools
+	pkgrel = 3
+	url = https://pypi.python.org/pypi/pybedtools
 	arch = any
 	license = GPL2
 	makedepends = python
-	makedepends = cython
 	makedepends = python-setuptools
+	makedepends = cython
+	makedepends = python2
+	makedepends = python2-setuptools
+	makedepends = cython2
+	options = !emptydirs
+	source = python-pybedtools-0.7.10.tar.gz::https://pypi.python.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz
+	sha256sums = 518a2311bd33f29cf2ee8fc1a028dda8c8e380c9fc83fcb0fbaa206933174b50
+
+pkgname = python-pybedtools
 	depends = bedtools
 	depends = python
 	depends = python-numpy
@@ -17,9 +25,15 @@ pkgbase = python-pybedtools
 	optdepends = htslib: for working with SAM/BAM/CRAM files
 	optdepends = python-matplotlib: for plotting genomic intervals
 	optdepends = ucsc-kent-genome-tools: for bedgraph to bigwig conversions
-	options = !emptydirs
-	source = https://pypi.python.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz
-	sha256sums = 518a2311bd33f29cf2ee8fc1a028dda8c8e380c9fc83fcb0fbaa206933174b50
 
-pkgname = python-pybedtools
+pkgname = python2-pybedtools
+	depends = bedtools
+	depends = python2
+	depends = python2-numpy
+	depends = python2-pandas
+	depends = python2-pysam
+	depends = python2-six
+	optdepends = htslib: for working with SAM/BAM/CRAM files
+	optdepends = python2-matplotlib: for plotting genomic intervals
+	optdepends = ucsc-kent-genome-tools: for bedgraph to bigwig conversions
 
diff --git a/PKGBUILD b/PKGBUILD
index 2ad14125bfb8..444b392a6b0e 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,29 +1,77 @@
 # Maintainer: Clint Valentine <valentine.clint@gmail.com>
 
-pkgname='python-pybedtools'
+_name=pybedtools
+pkgbase='python-pybedtools'
+pkgname=('python-pybedtools' 'python2-pybedtools')
 pkgver=0.7.10
-pkgrel=2
-pkgdesc="Python wrapper for Aaron Quinlan's bedtools."
+pkgrel=3
+pkgdesc="Python wrapper for the bioinformatics genomic arithmetic tool bedtools"
 arch=('any')
-url="http://daler.github.io/pybedtools"
+url="https://pypi.python.org/pypi/pybedtools"
 license=('GPL2')
-depends=(
-  'bedtools'
-  'python'
-  'python-numpy'
-  'python-pandas'
-  'python-pysam'
-  'python-six')
-makedepends=('python' 'cython' 'python-setuptools')
-optdepends=(
-  'htslib: for working with SAM/BAM/CRAM files'
-  'python-matplotlib: for plotting genomic intervals'
-  'ucsc-kent-genome-tools: for bedgraph to bigwig conversions')
+makedepends=(
+  'python' 'python-setuptools' 'cython'
+  'python2' 'python2-setuptools' 'cython2')
 options=(!emptydirs)
-source=("https://pypi.python.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz")
+source=("${pkgname}"-"${pkgver}".tar.gz::https://pypi.python.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz)
 sha256sums=('518a2311bd33f29cf2ee8fc1a028dda8c8e380c9fc83fcb0fbaa206933174b50')
 
+prepare() {
+  cp -a "${_name}"-"${pkgver}"{,-py2}
+}
+
 package() {
-  cd "${srcdir}/${pkgname//python-/}-${pkgver}"
+  cd "${srcdir}"/"${_name}"-"${pkgver}"
   python setup.py install --root="${pkgdir}/" --optimize=1
 }
+
+build(){
+  cd "${srcdir}"/"${_name}"-"${pkgver}"
+  python setup.py build
+
+  cd "${srcdir}"/"${_name}"-"${pkgver}"-py2
+  python2 setup.py build
+}
+
+package_python2-pybedtools() {
+  depends=(
+    'bedtools'
+    'python2'
+    'python2-numpy'
+    'python2-pandas'
+    'python2-pysam'
+    'python2-six')
+  optdepends=(
+    'htslib: for working with SAM/BAM/CRAM files'
+    'python2-matplotlib: for plotting genomic intervals'
+    'ucsc-kent-genome-tools: for bedgraph to bigwig conversions')
+
+  cd "${_name}"-"${pkgver}"-py2
+  python2 setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build
+  install -Dm644 LICENSE.txt "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE.txt
+
+  sed 's/python/python2/g' "${pkgdir}"/usr/bin/pybedtools
+  mv "${pkgdir}"/usr/bin/pybedtools "${pkgdir}"/usr/bin/pybedtools2
+
+  for script in "${pkgdir}"/usr/bin/*.py;do
+    mv "${pkgdir}"/usr/bin/"${script}" "${pkgdir}"/usr/bin/"${script%.*py}"2.py
+  done
+}
+
+package_python-pybedtools() {
+  depends=(
+    'bedtools'
+    'python'
+    'python-numpy'
+    'python-pandas'
+    'python-pysam'
+    'python-six')
+  optdepends=(
+    'htslib: for working with SAM/BAM/CRAM files'
+    'python-matplotlib: for plotting genomic intervals'
+    'ucsc-kent-genome-tools: for bedgraph to bigwig conversions')
+
+  cd "${_name}"-"${pkgver}"
+  python setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build
+  install -Dm644 LICENSE.txt "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE.txt
+}