python-pybedtools-git to split package

2 files changed, 95 insertions, 32 deletions

diff --git a/.SRCINFO b/.SRCINFO
index f8c210022c09..c2bbbc7c51ae 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,26 +1,41 @@
 pkgbase = python-pybedtools-git
-	pkgdesc = Python wrapper for Aaron Quinlan's bedtools.
-	pkgver = 0.7.10.r21.g7143a86
+	pkgdesc = Python wrapper for the bioinformatics genomic arithmetic tool bedtools
+	pkgver = 0.7.10.r25.g9ab3ff6
 	pkgrel = 1
-	url = http://daler.github.io/pybedtools
+	url = https://pypi.python.org/pypi/pybedtools
 	arch = any
 	license = GPL2
-	makedepends = cython
+	makedepends = python
 	makedepends = python-setuptools
+	makedepends = cython
+	makedepends = python2
+	makedepends = python2-setuptools
+	makedepends = cython2
+	provides = python-pybedtools
+	conflicts = python-pybedtools
+	options = !emptydirs
+	source = pybedtools-0.7.10.r25.g9ab3ff6::git+https://github.com/daler/pybedtools.git
+	sha256sums = SKIP
+
+pkgname = python-pybedtools-git
+	depends = bedtools
 	depends = python
 	depends = python-numpy
 	depends = python-pandas
-	depends = python-pysam>=0.8.1
+	depends = python-pysam
 	depends = python-six
-	optdepends = bedtools: more-or-less required by namesake
 	optdepends = htslib: for working with SAM/BAM/CRAM files
 	optdepends = python-matplotlib: for plotting genomic intervals
 	optdepends = ucsc-kent-genome-tools: for bedgraph to bigwig conversions
-	provides = python-pybedtools
-	conflicts = python-pybedtools
-	options = !emptydirs
-	source = git+https://github.com/daler/pybedtools.git
-	md5sums = SKIP
 
-pkgname = python-pybedtools-git
+pkgname = python2-pybedtools-git
+	depends = bedtools
+	depends = python2
+	depends = python2-numpy
+	depends = python2-pandas
+	depends = python2-pysam
+	depends = python2-six
+	optdepends = htslib: for working with SAM/BAM/CRAM files
+	optdepends = python2-matplotlib: for plotting genomic intervals
+	optdepends = ucsc-kent-genome-tools: for bedgraph to bigwig conversions
 
diff --git a/PKGBUILD b/PKGBUILD
index 752b318f53ea..d6f18dca5862 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,36 +1,84 @@
 # Maintainer: Clint Valentine <valentine.clint@gmail.com>
 
-pkgname='python-pybedtools-git'
-pkgver=0.7.10.r21.g7143a86
+_name=pybedtools
+pkgbase='python-pybedtools-git'
+pkgname=('python-pybedtools-git' 'python2-pybedtools-git')
+pkgver=0.7.10.r25.g9ab3ff6
 pkgrel=1
-pkgdesc="Python wrapper for Aaron Quinlan's bedtools."
+pkgdesc="Python wrapper for the bioinformatics genomic arithmetic tool bedtools"
 arch=('any')
-url="http://daler.github.io/pybedtools"
+url="https://pypi.python.org/pypi/pybedtools"
 license=('GPL2')
-depends=(
-  'python'
-  'python-numpy'
-  'python-pandas'
-  'python-pysam>=0.8.1'
-  'python-six')
-makedepends=('cython' 'python-setuptools')
-optdepends=(
-  'bedtools: more-or-less required by namesake'
-  'htslib: for working with SAM/BAM/CRAM files'
-  'python-matplotlib: for plotting genomic intervals'
-  'ucsc-kent-genome-tools: for bedgraph to bigwig conversions')
 provides=('python-pybedtools')
 conflicts=('python-pybedtools')
+makedepends=(
+  'python' 'python-setuptools' 'cython'
+  'python2' 'python2-setuptools' 'cython2')
 options=(!emptydirs)
-source=("git+https://github.com/daler/pybedtools.git")
-md5sums=('SKIP')
+source=("${_name}"-"${pkgver}"::git+https://github.com/daler/"${_name}".git)
+sha256sums=('SKIP')
 
 pkgver() {
-  cd "pybedtools"
+  cd "${_name}"-"${pkgver}"
   git describe --long | sed 's/\([^-]*-g\)/r\1/;s/-/./g' | sed s'/v//'
 }
 
+prepare() {
+  cp -a "${_name}"-"${pkgver}"{,-py2}
+}
+
 package() {
-  cd "${srcdir}/pybedtools"
+  cd "${srcdir}"/"${_name}"-"${pkgver}"
   python setup.py install --root="${pkgdir}/" --optimize=1
 }
+
+build(){
+  cd "${srcdir}"/"${_name}"-"${pkgver}"
+  python setup.py build
+
+  cd "${srcdir}"/"${_name}"-"${pkgver}"-py2
+  python2 setup.py build
+}
+
+package_python2-pybedtools-git() {
+  depends=(
+    'bedtools'
+    'python2'
+    'python2-numpy'
+    'python2-pandas'
+    'python2-pysam'
+    'python2-six')
+  optdepends=(
+    'htslib: for working with SAM/BAM/CRAM files'
+    'python2-matplotlib: for plotting genomic intervals'
+    'ucsc-kent-genome-tools: for bedgraph to bigwig conversions')
+
+  cd "${_name}"-"${pkgver}"-py2
+  python2 setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build
+  install -Dm644 LICENSE.txt "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE.txt
+
+  sed 's/python/python2/g' "${pkgdir}"/usr/bin/pybedtools
+  mv "${pkgdir}"/usr/bin/pybedtools "${pkgdir}"/usr/bin/pybedtools2
+
+  for script in "${pkgdir}"/usr/bin/*.py;do
+    mv "${script}" "${pkgdir}"/usr/bin/$(basename "${script%.*py}")2.py
+  done
+}
+
+package_python-pybedtools-git() {
+  depends=(
+    'bedtools'
+    'python'
+    'python-numpy'
+    'python-pandas'
+    'python-pysam'
+    'python-six')
+  optdepends=(
+    'htslib: for working with SAM/BAM/CRAM files'
+    'python-matplotlib: for plotting genomic intervals'
+    'ucsc-kent-genome-tools: for bedgraph to bigwig conversions')
+
+  cd "${_name}"-"${pkgver}"
+  python setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build
+  install -Dm644 LICENSE.txt "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE.txt
+}