diff options
| author | clintval | 2018-01-21 18:26:27 -0800 |
|---|---|---|
| committer | clintval | 2018-01-21 18:26:27 -0800 |
| commit | 9fdb7cb16c3560b9470b3cc32781458503586dcf (patch) | |
| tree | d4c310bade5e1d6c4caac74265210471b947553b | |
| parent | 3d114dfa8d448cf3b221cea9534a417023baf9ad (diff) | |
| download | aur-9fdb7cb16c3560b9470b3cc32781458503586dcf.tar.gz | |
python-pybedtools-git provides/conflicts per install
| -rw-r--r-- | .SRCINFO | 8 | ||||
| -rw-r--r-- | PKGBUILD | 8 |
2 files changed, 10 insertions, 6 deletions
@@ -1,7 +1,7 @@ pkgbase = python-pybedtools-git pkgdesc = Python wrapper for the bioinformatics genomic arithmetic tool bedtools pkgver = 0.7.10.r25.g9ab3ff6 - pkgrel = 1 + pkgrel = 2 url = https://pypi.python.org/pypi/pybedtools arch = any license = GPL2 @@ -11,8 +11,6 @@ pkgbase = python-pybedtools-git makedepends = python2 makedepends = python2-setuptools makedepends = cython2 - provides = python-pybedtools - conflicts = python-pybedtools options = !emptydirs source = pybedtools-0.7.10.r25.g9ab3ff6::git+https://github.com/daler/pybedtools.git sha256sums = SKIP @@ -27,6 +25,8 @@ pkgname = python-pybedtools-git optdepends = htslib: for working with SAM/BAM/CRAM files optdepends = python-matplotlib: for plotting genomic intervals optdepends = ucsc-kent-genome-tools: for bedgraph to bigwig conversions + provides = python-pyvcf + conflicts = python-pyvcf pkgname = python2-pybedtools-git depends = bedtools @@ -38,4 +38,6 @@ pkgname = python2-pybedtools-git optdepends = htslib: for working with SAM/BAM/CRAM files optdepends = python2-matplotlib: for plotting genomic intervals optdepends = ucsc-kent-genome-tools: for bedgraph to bigwig conversions + provides = python2-pyvcf + conflicts = python2-pyvcf @@ -4,13 +4,11 @@ _name=pybedtools pkgbase='python-pybedtools-git' pkgname=('python-pybedtools-git' 'python2-pybedtools-git') pkgver=0.7.10.r25.g9ab3ff6 -pkgrel=1 +pkgrel=2 pkgdesc="Python wrapper for the bioinformatics genomic arithmetic tool bedtools" arch=('any') url="https://pypi.python.org/pypi/pybedtools" license=('GPL2') -provides=('python-pybedtools') -conflicts=('python-pybedtools') makedepends=( 'python' 'python-setuptools' 'cython' 'python2' 'python2-setuptools' 'cython2') @@ -47,6 +45,8 @@ package_python2-pybedtools-git() { 'htslib: for working with SAM/BAM/CRAM files' 'python2-matplotlib: for plotting genomic intervals' 'ucsc-kent-genome-tools: for bedgraph to bigwig conversions') + provides=('python2-pyvcf') + conflicts=('python2-pyvcf') cd "${_name}"-"${pkgver}"-py2 python2 setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build @@ -72,6 +72,8 @@ package_python-pybedtools-git() { 'htslib: for working with SAM/BAM/CRAM files' 'python-matplotlib: for plotting genomic intervals' 'ucsc-kent-genome-tools: for bedgraph to bigwig conversions') + provides=('python-pyvcf') + conflicts=('python-pyvcf') cd "${_name}"-"${pkgver}" python setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build |