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| author | Jean-Gabriel Young | 2019-06-23 16:35:57 -0400 |
|---|---|---|
| committer | Jean-Gabriel Young | 2019-06-23 16:35:57 -0400 |
| commit | 10daff16516e29fb70a21e07447b4a4157f621cf (patch) | |
| tree | 3e6363726b934b73d29c5cd026f0a0548cfe095c | |
| parent | 03216200dfc0d122aeccb19610b5f7da546cf6ee (diff) | |
| download | aur-10daff16516e29fb70a21e07447b4a4157f621cf.tar.gz | |
Modified PKGBUILD to use installed C++ libraries instead of libraries shipped with pystan
| -rw-r--r-- | .SRCINFO | 7 | ||||
| -rw-r--r-- | PKGBUILD | 12 | ||||
| -rw-r--r-- | use-usr-libs.patch | 18 |
3 files changed, 32 insertions, 5 deletions
@@ -1,15 +1,20 @@ pkgbase = python-pystan pkgdesc = Python interface to Stan, a package for Bayesian inference. pkgver = 2.19.0.0 - pkgrel = 1 + pkgrel = 2 url = http://mc-stan.org/ arch = i686 arch = x86_64 license = GPLv3 depends = python-numpy depends = cython + depends = boost + depends = eigen + depends = sundials source = https://files.pythonhosted.org/packages/source/p/pystan/pystan-2.19.0.0.tar.gz + source = use-usr-libs.patch sha256sums = b85301b960d5991918b40bd64a4e9321813657a9fc028e0f39edce7220a309eb + sha256sums = 4446891828e63f3541f3386cd5b44f35d575646dcc328016d23524756e35252a pkgname = python-pystan @@ -2,15 +2,19 @@ pkgname=python-pystan pkgver=2.19.0.0 -pkgrel=1 +pkgrel=2 pkgdesc="Python interface to Stan, a package for Bayesian inference." arch=('i686' 'x86_64') url='http://mc-stan.org/' license=(GPLv3) -depends=(python-numpy cython) +depends=(python-numpy cython boost eigen sundials) _name=${pkgname#python-} -source=("https://files.pythonhosted.org/packages/source/${_name::1}/${_name}/${_name}-${pkgver}.tar.gz") -sha256sums=('b85301b960d5991918b40bd64a4e9321813657a9fc028e0f39edce7220a309eb') +source=("https://files.pythonhosted.org/packages/source/${_name::1}/${_name}/${_name}-${pkgver}.tar.gz" "use-usr-libs.patch") +sha256sums=('b85301b960d5991918b40bd64a4e9321813657a9fc028e0f39edce7220a309eb' + '4446891828e63f3541f3386cd5b44f35d575646dcc328016d23524756e35252a') +prepare() { + patch --strip=0 --input=use-usr-libs.patch +} build() { cd ${_name}-${pkgver} python setup.py build diff --git a/use-usr-libs.patch b/use-usr-libs.patch new file mode 100644 index 000000000000..fe920f187234 --- /dev/null +++ b/use-usr-libs.patch @@ -0,0 +1,18 @@ +diff --unified --recursive --text pystan-2.19.0.0/setup.py pystan-2.19.0.0/setup.py +--- pystan-2.19.0.0/setup.py 2019-04-02 16:12:04.000000000 -0400 ++++ pystan-2.19.0.0/setup.py 2019-06-23 15:55:25.641273923 -0400 +@@ -100,9 +100,11 @@ + + stan_include_dirs = ['pystan/stan/src', + 'pystan/stan/lib/stan_math/', +- 'pystan/stan/lib/stan_math/lib/eigen_3.3.3', +- 'pystan/stan/lib/stan_math/lib/boost_1.69.0', +- 'pystan/stan/lib/stan_math/lib/sundials_4.1.0/include'] ++ '/usr/include/eigen3/', ++ '/usr/include/boost/', ++ '/usr/include/sundials/', ++ '/usr/include/cvode/', ++ '/usr/include/cvodes/'] + stan_macros = [ + ('BOOST_DISABLE_ASSERTS', None), + ('BOOST_NO_DECLTYPE', None), |