Version 3.4.2

3 files changed, 27 insertions, 8 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 8f0c494811bd..de72e3e1512b 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,8 +1,6 @@
-# Generated by mksrcinfo v8
-# Sun Mar 12 12:29:49 UTC 2017
 pkgbase = python-pyteomics
 	pkgdesc = A framework for proteomics data analysis.
-	pkgver = 3.4.1
+	pkgver = 3.4.2
 	pkgrel = 1
 	url = http://pythonhosted.org/pyteomics
 	changelog = CHANGELOG
@@ -16,8 +14,8 @@ pkgbase = python-pyteomics
 	optdepends = python-lxml: for XML parsing modules
 	optdepends = python-numpy: for most of features, highly recommended
 	options = !emptydirs
-	source = https://pypi.io/packages/source/p/pyteomics/pyteomics-3.4.1.tar.gz
-	md5sums = 9e1aecc88b7ea6e7bc6e77e6479cbb82
+	source = https://pypi.io/packages/source/p/pyteomics/pyteomics-3.4.2.tar.gz
+	md5sums = 36cc4c3bab653fdbe22aec71858a461f
 
 pkgname = python-pyteomics
 
diff --git a/CHANGELOG b/CHANGELOG
index 26e06e13a1cc..ae7bcfd51f05 100644
--- a/CHANGELOG
+++ b/CHANGELOG
@@ -1,3 +1,24 @@
+3.4.2
+-----
+
+ - New module :py:mod:`pyteomics.ms1` for parsing of MS1 files.
+
+ - :py:class:`mass.Composition` constructor now accepts `ion_type` and `charge` parameters.
+
+ - New functions :py:func:`pyteomics.mzid.DataFrame` and :py:func:`pyteomics.mzid.filter_df`.
+   Their behavior may be refined later on.
+
+ - Changes in behavior of :py:func:`pyteomics.auxiliary.filter` and :py:func:`pyteomics.auxiliary.qvalues`:
+
+   - both functions now always return DataFrames with :py:class:`pandas.DataFrame` input and `full_output=True`.
+
+   - string values of `key`, `is_decoy` and `pep` are substituted with simple itemgetter functions for
+     non-pandas, non-numpy input;
+
+   - additional parameters `score_label`, `decoy_label`, `pep_label`, and `q_label` for output control.
+
+ - Performance optimizations in XML parsing code.
+
 3.4.1
 -----
 
diff --git a/PKGBUILD b/PKGBUILD
index a158b7e4543a..226b9635cc53 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,10 +1,10 @@
 # Maintainer: Lev Levitsky <levlev at mail dot ru>
 pkgname=python-pyteomics
-pkgver=3.4.1
+pkgver=3.4.2
 pkgrel=1
 pkgdesc="A framework for proteomics data analysis."
 arch=('any')
-url="http://pythonhosted.org/pyteomics"
+url="http://pyteomics.readthedocs.io"
 license=('Apache')
 depends=('python' 'python-setuptools')
 optdepends=('python-matplotlib: for pylab_aux module'
@@ -14,7 +14,7 @@ optdepends=('python-matplotlib: for pylab_aux module'
             'python-numpy: for most of features, highly recommended')
 options=(!emptydirs)
 source=("https://pypi.io/packages/source/p/pyteomics/pyteomics-${pkgver}.tar.gz")
-md5sums=('9e1aecc88b7ea6e7bc6e77e6479cbb82')
+md5sums=('36cc4c3bab653fdbe22aec71858a461f')
 changelog="CHANGELOG"
 package() {
   cd "${srcdir}/pyteomics-${pkgver}"