Version 4.5

3 files changed, 49 insertions, 6 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 7b47c7dff477..a8989e831c9b 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
 pkgbase = python2-pyteomics
 	pkgdesc = A framework for proteomics data analysis.
-	pkgver = 4.4.2
+	pkgver = 4.5
 	pkgrel = 1
 	url = https://pyteomics.readthedocs.io
 	changelog = CHANGELOG
@@ -16,8 +16,7 @@ pkgbase = python2-pyteomics
 	optdepends = python2-dill: needed for multiprocessing when pickle is not enough
 	optdepends = python2-pynumpress: for Numpress support
 	options = !emptydirs
-	source = https://pypi.debian.net/pyteomics/pyteomics-4.4.2-py2.py3-none-any.whl
-	sha256sums = 4dc72253a4727bda9bcb1b11a46c5ed13dd8a4c1fb0e35dda094420b1ef26044
+	source = https://pypi.debian.net/pyteomics/pyteomics-4.5-py2.py3-none-any.whl
+	sha256sums = 48ea75a6228a659fc3fb57da174f7c2632a9d296f8fe271595734e062f5f218e
 
 pkgname = python2-pyteomics
-
diff --git a/CHANGELOG b/CHANGELOG
index 072b9f3abf9e..3617323334f8 100644
--- a/CHANGELOG
+++ b/CHANGELOG
@@ -1,3 +1,47 @@
+4.5
+---
+
+ - Add support for `mzMLb <https://www.biorxiv.org/content/10.1101/2020.02.13.947218v3>`_
+   (`#35 <https://github.com/levitsky/pyteomics/pull/35>`_
+   and `#38 <https://github.com/levitsky/pyteomics/pull/38>`_ by Joshua Klein)
+   with new module :py:mod:`pyteomics.mzmlb`.
+
+ - Add ProteomeExchange backend for PROXI requests and implement an aggregator for responses from all backends
+   (`#36 <https://github.com/levitsky/pyteomics/pull/36>`_,
+   `#45 <https://github.com/levitsky/pyteomics/pull/45>`_, and
+   `#55 <https://github.com/levitsky/pyteomics/pull/55>`_ by Joshua Klein)
+   in :py:mod:`pyteomics.usi`.
+
+ - Add support for `ProForma <https://www.psidev.info/proforma>`_
+   (`#37 <https://github.com/levitsky/pyteomics/pull/37>`_ by Joshua Klein)
+   in new module :py:mod:`pyteomics.proforma`.
+
+ - New arguments `keep_nterm_M` and `fix_aa` in :py:func:`pyteomics.fasta.shuffle`
+   (`#54 <https://github.com/levitsky/pyteomics/pull/54>`_ by Vladimir Gorshkov).
+
+ - Fx for unwanted warnings in :py:func:`pyteomics.auxiliary.file_helpers._check_use_index` when
+   `use_index` is explicitly passed (`#52 <https://github.com/levitsky/pyteomics/issues/52>`_).
+
+ - Update the default XML schema for featureXML and fix issues with incorrectly specified data types
+   (`#53 <https://github.com/levitsky/pyteomics/pull/53>`_).
+
+ - Add a new backend for spectrum annotation and plotting. :py:func:`pyteomics.pylab_aux.plot_spectrum` and
+   :py:func:`pyteomics.pylab_aux.annotate_spectrum` can now use
+   `spectrum_utils <https://github.com/bittremieux/spectrum_utils>`_ under the hood
+   (`#43 <https://github.com/levitsky/pyteomics/pull/43>`_).
+
+   See new `Example 4 <examples/example_annotation.html>`_ for demonstration.
+
+ - New function :py:func:`pyteomics.pylab_aux.mirror` for making a
+   `spectrum_utils <https://github.com/bittremieux/spectrum_utils>`_ mirror plot.
+
+ - :py:func:`pyteomics.pylab_aux.plot_spectrum` and :py:func:`pyteomics.pylab_aux.annotate_spectrum` now
+   always return :py:class:`matplotlib.pyplot.Axes`.
+
+ - Add a warning when passing an existing file by name in writing functions.
+   The default mode for output files will change from `'a'` to `'w'` in a future version.
+
+
 4.4.2
 -----
 
diff --git a/PKGBUILD b/PKGBUILD
index 6217b7cea0ab..6c21efd394b5 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,6 +1,6 @@
 # Maintainer: Lev Levitsky <levlev at mail dot ru>
 pkgname=python2-pyteomics
-pkgver=4.4.2
+pkgver=4.5
 pkgrel=1
 pkgdesc="A framework for proteomics data analysis."
 arch=('any')
@@ -16,7 +16,7 @@ optdepends=('python2-matplotlib: for pylab_aux module'
             'python2-pynumpress: for Numpress support')
 options=(!emptydirs)
 source=("https://pypi.debian.net/pyteomics/pyteomics-${pkgver}-py2.py3-none-any.whl")
-sha256sums=('4dc72253a4727bda9bcb1b11a46c5ed13dd8a4c1fb0e35dda094420b1ef26044')
+sha256sums=('48ea75a6228a659fc3fb57da174f7c2632a9d296f8fe271595734e062f5f218e')
 changelog=CHANGELOG
 
 package() {