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authorLev Levitsky2021-03-26 16:01:40 +0300
committerLev Levitsky2021-03-26 16:02:04 +0300
commit70058c3ae98d7b2fff459e17cd21dfbfd7348498 (patch)
tree30f3579d7bc37ca4e5ed0345ea48a99a6ba62b18
parenteb604c90dab4437c1dfff68f9faee28865f977bb (diff)
downloadaur-70058c3ae98d7b2fff459e17cd21dfbfd7348498.tar.gz
4.4.2
-rw-r--r--.SRCINFO6
-rw-r--r--CHANGELOG20
-rw-r--r--PKGBUILD4
3 files changed, 25 insertions, 5 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 19da15ef7cd9..7b47c7dff477 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
pkgbase = python2-pyteomics
pkgdesc = A framework for proteomics data analysis.
- pkgver = 4.4.1
+ pkgver = 4.4.2
pkgrel = 1
url = https://pyteomics.readthedocs.io
changelog = CHANGELOG
@@ -16,8 +16,8 @@ pkgbase = python2-pyteomics
optdepends = python2-dill: needed for multiprocessing when pickle is not enough
optdepends = python2-pynumpress: for Numpress support
options = !emptydirs
- source = https://pypi.debian.net/pyteomics/pyteomics-4.4.1-py2.py3-none-any.whl
- sha256sums = ab7ac3a762507d3849dcf19308e8d67d7ba9ccf3f3961d58c9cc9892850c5374
+ source = https://pypi.debian.net/pyteomics/pyteomics-4.4.2-py2.py3-none-any.whl
+ sha256sums = 4dc72253a4727bda9bcb1b11a46c5ed13dd8a4c1fb0e35dda094420b1ef26044
pkgname = python2-pyteomics
diff --git a/CHANGELOG b/CHANGELOG
index ffb4d005933c..072b9f3abf9e 100644
--- a/CHANGELOG
+++ b/CHANGELOG
@@ -1,3 +1,23 @@
+4.4.2
+-----
+
+ - Add cleavage rules from `MS ontology <http://purl.obolibrary.org/obo/MS_1001045>`_ as
+ :py:data:`pyteomics.parser.psims_rules`. :py:func:`pyteomics.parser.cleave` now understands keys and accessions from
+ :py:data:`psims_rules` as rules.
+
+ - Improve mzIdentML parser performance (and possibly others in some cases) by relying more on offset indexes
+ (`#34 <https://github.com/levitsky/pyteomics/pull/34>`_ by Joshua Klein).
+
+ - Extend the :py:class:`pyteomics.mztab.MzTab` parser with auto-generated properties. Almost all metadata entities are
+ now exposed as properties on the parser object (`#23 <https://github.com/levitsky/pyteomics/pull/23>`_ by Joshua Klein).
+
+ - Fix the version parsing in :py:mod:`pyteomics.mztab` to support shorter vMzTab version strings
+ (`#24 <https://github.com/levitsky/pyteomics/pull/24>`_ by Donavan See).
+
+ - Tweak the :py:class:`pyteomics.pepxml.PepXML` parser to present some values that were previously reported as None.
+
+ - Fix compatibility with :py:mod:`SQLAlchemy` 1.4 (`#32 <https://github.com/levitsky/pyteomics/pull/32>`_ by Joshua Klein).
+
4.4.1
-----
diff --git a/PKGBUILD b/PKGBUILD
index 4118a6d63a12..6217b7cea0ab 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,6 +1,6 @@
# Maintainer: Lev Levitsky <levlev at mail dot ru>
pkgname=python2-pyteomics
-pkgver=4.4.1
+pkgver=4.4.2
pkgrel=1
pkgdesc="A framework for proteomics data analysis."
arch=('any')
@@ -16,7 +16,7 @@ optdepends=('python2-matplotlib: for pylab_aux module'
'python2-pynumpress: for Numpress support')
options=(!emptydirs)
source=("https://pypi.debian.net/pyteomics/pyteomics-${pkgver}-py2.py3-none-any.whl")
-sha256sums=('ab7ac3a762507d3849dcf19308e8d67d7ba9ccf3f3961d58c9cc9892850c5374')
+sha256sums=('4dc72253a4727bda9bcb1b11a46c5ed13dd8a4c1fb0e35dda094420b1ef26044')
changelog=CHANGELOG
package() {