diff options
author | Lev Levitsky | 2016-09-08 23:09:22 +0300 |
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committer | Lev Levitsky | 2016-09-08 23:09:22 +0300 |
commit | e00552b80e75fc06cf54c2cadbcec058d2fe7bcf (patch) | |
tree | b2d94e5a06cc21978b980737135475225248ff6e | |
parent | be69b00dd429dfbfd267a34f96ff14bd604445df (diff) | |
download | aur-e00552b80e75fc06cf54c2cadbcec058d2fe7bcf.tar.gz |
Version 3.4
-rw-r--r-- | .SRCINFO | 8 | ||||
-rw-r--r-- | CHANGELOG | 25 | ||||
-rw-r--r-- | PKGBUILD | 4 |
3 files changed, 28 insertions, 9 deletions
@@ -1,8 +1,8 @@ # Generated by mksrcinfo v8 -# Thu Jun 2 12:51:18 UTC 2016 +# Thu Sep 8 20:08:35 UTC 2016 pkgbase = python2-pyteomics pkgdesc = A framework for proteomics data analysis. - pkgver = 3.3.1 + pkgver = 3.4 pkgrel = 1 url = http://pythonhosted.org/pyteomics changelog = CHANGELOG @@ -16,8 +16,8 @@ pkgbase = python2-pyteomics optdepends = python2-lxml: for XML parsing modules optdepends = python2-numpy: for most of features, highly recommended options = !emptydirs - source = https://pypi.io/packages/source/p/pyteomics/pyteomics-3.3.1.tar.gz - md5sums = 0b81c096944334c53ee52c213a42edee + source = https://pypi.io/packages/source/p/pyteomics/pyteomics-3.4.tar.gz + md5sums = 3c8d1bcc16c53100e531a10a2853f679 pkgname = python2-pyteomics diff --git a/CHANGELOG b/CHANGELOG index f6c6d142edfc..15672ad90dd2 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,3 +1,22 @@ +3.4 +--- + + - New module :py:mod:`pyteomics.mzxml` for parsing of MzXML files. + + - New parameter `dtype` in :py:func:`pyteomics.mgf.read`, :py:func:`pyteomics.mzml.read` + and :py:func:`pyteomics.mzxml.read` + allows changing the dtype of arrays yielded by the parsers. + + - :py:mod:`pyteomics.featurexml` moved into a subpackage :py:mod:`pyteomics.openms`. + + - New module :py:mod:`pyteomics.openms.trafoxml` for OpenMS transformation files. + + - Bugfix in XML indexing code to make it work on Python 3.x versions prior to 3.5. + + - Bugfix in :py:func:`pyteomics.pylab_aux.scatter_trend` (support for lists and other non-ndarrays). + + - Performance improvements in :py:mod:`pyteomics.achrom` calibration functions. + 3.3.1 ----- @@ -5,10 +24,10 @@ New submodule :py:mod:`pyteomics.featurexml` with a parser for OpenMS **featureX 3.3 --- - + - mzML and mzIdentML parsers can now create an index of element offsets. This allows quick random access to elements by unique ID. - + - mzML parsers now come in two flavors: :py:class:`pyteomics.mzml.MzML` and :py:class:`pyteomics.mzml.PreIndexedMzML`. The latter uses the byte offsets listed at the end of the file. @@ -81,7 +100,7 @@ Other changes: - Bugfix in :py:mod:`pyteomics.auxiliary`. - New parameter `show_legend` in :py:func:`pyteomics.pylab_aux.scatter_trend`. - + - Performance improvements in :py:mod:`pyteomics.parser`. 3.1 @@ -1,6 +1,6 @@ # Maintainer: Lev Levitsky <levlev at mail dot ru> pkgname=python2-pyteomics -pkgver=3.3.1 +pkgver=3.4 pkgrel=1 pkgdesc="A framework for proteomics data analysis." arch=('any') @@ -14,7 +14,7 @@ optdepends=('python2-matplotlib: for pylab_aux module' 'python2-numpy: for most of features, highly recommended') options=(!emptydirs) source=("https://pypi.io/packages/source/p/pyteomics/pyteomics-${pkgver}.tar.gz") -md5sums=('0b81c096944334c53ee52c213a42edee') +md5sums=('3c8d1bcc16c53100e531a10a2853f679') changelog="CHANGELOG" package() { cd "${srcdir}/pyteomics-${pkgver}" |