add PKGBUILD and .SRCINFO

2 files changed, 67 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..a73fcab087f0
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,24 @@
+pkgbase = qtltools-git
+	pkgdesc = A complete tool set for molecular QTL discovery and analysis
+	pkgver = 1.1.72.dd02b8e
+	pkgrel = 1
+	url = https://github.com/alienzj/qtltools
+	arch = i686
+	arch = x86_64
+	license = GPLV3
+	depends = boost
+	depends = bzip2
+	depends = gzip
+	depends = zip
+	depends = gsl
+	depends = cblas
+	depends = blas
+	depends = htslib
+	depends = r
+	provides = qtltools=1.1.72.dd02b8e
+	conflicts = qtltools
+	source = qtltools::git+https://github.com/alienzj/qtltools.git
+	md5sums = SKIP
+
+pkgname = qtltools-git
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..366cd7f4a9fa
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,43 @@
+# Maintainer: Jie Zhu <lovelornpig@gmail.com>
+# Developers: Olivier Delaneau <olivier.delaneau@gmail.com>
+#             Halit Ongen <halit.ongen@unige.ch>
+# please see: https://github.com/qtltools/qtltools
+
+_basename="qtltools"
+pkgname=${_basename}-git
+pkgver=1.1.72.dd02b8e
+pkgrel=1
+pkgdesc="A complete tool set for molecular QTL discovery and analysis"
+arch=('i686' 'x86_64')
+url="https://github.com/alienzj/qtltools"
+license=('GPLV3')
+depends=('boost' 'bzip2' 'gzip' 'zip' 'gsl' 'cblas' 'blas' 'htslib' 'r')
+provides=(${_basename}=${pkgver})
+conflicts=(${_basename})
+source=(${_basename}::git+https://github.com/alienzj/qtltools.git)
+md5sums=('SKIP')
+
+prepare() {
+  cd "${srcdir}/${_basename}"
+  echo "0.1.r$(git rev-list --count HEAD).$(git rev-parse --short HEAD)"
+}
+
+build() {
+  cd "${srcdir}/${_basename}"
+  
+  if [[ -d build ]]; then
+      rm -rf build
+  fi
+  mkdir build && cd build
+  
+  cmake -DCMAKE_INSTALL_PREFIX="/usr" ..
+  make
+}
+
+package() {
+  cd "${srcdir}/${_basename}/build"
+  make install DESTDIR="${pkgdir}/"
+
+  install  -D -m644 "${srcdir}/${_basename}/README" \
+           "${pkgdir}/usr/share/doc/${_basename}/README"
+}