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author | Pekka Ristola | 2023-11-18 13:05:21 +0200 |
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committer | Pekka Ristola | 2023-11-18 13:05:21 +0200 |
commit | c47f19e98bc55ca0c014aadadedaca19609c916a (patch) | |
tree | 2dd7e71747d48344b616df9a64d881ee429249ad | |
download | aur-c47f19e98bc55ca0c014aadadedaca19609c916a.tar.gz |
Version 1.0.0
-rw-r--r-- | .SRCINFO | 25 | ||||
-rw-r--r-- | PKGBUILD | 51 |
2 files changed, 76 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..be7a38c230da --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,25 @@ +pkgbase = r-alabaster.files + pkgdesc = Wrappers to Save Common File Formats + pkgver = 1.0.0 + pkgrel = 1 + url = https://bioconductor.org/packages/alabaster.files + arch = any + license = MIT + checkdepends = r-testthat + checkdepends = r-variantannotation + depends = r-alabaster.base + depends = r-biocgenerics + depends = r-biostrings + depends = r-rsamtools + depends = r-rtracklayer + depends = r-s4vectors + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-testthat + optdepends = r-variantannotation + source = https://bioconductor.org/packages/release/bioc/src/contrib/alabaster.files_1.0.0.tar.gz + md5sums = ea12d81dadbad7340c5f2d6be276a697 + sha256sums = 52c451b6c1a5f827a791ee99f3367596569f39a117f4cd368536247b52c98a80 + +pkgname = r-alabaster.files diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..ee8f23ff575a --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,51 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=alabaster.files +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Wrappers to Save Common File Formats" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-alabaster.base + r-biocgenerics + r-biostrings + r-rsamtools + r-rtracklayer + r-s4vectors +) +checkdepends=( + r-testthat + r-variantannotation +) +optdepends=( + r-biocstyle + r-knitr + r-rmarkdown + r-testthat + r-variantannotation +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('ea12d81dadbad7340c5f2d6be276a697') +sha256sums=('52c451b6c1a5f827a791ee99f3367596569f39a117f4cd368536247b52c98a80') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} |