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author | Pekka Ristola | 2023-10-15 11:59:46 +0300 |
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committer | Pekka Ristola | 2023-10-15 11:59:46 +0300 |
commit | e5be3ab78b164ec6869ea13abffc56e76f0c39da (patch) | |
tree | c4dea04543281f571e908bb1ea7db5c695257cbc | |
download | aur-e5be3ab78b164ec6869ea13abffc56e76f0c39da.tar.gz |
Version 1.0.0
-rw-r--r-- | .SRCINFO | 24 | ||||
-rw-r--r-- | PKGBUILD | 50 |
2 files changed, 74 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..89e383d47ef1 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,24 @@ +pkgbase = r-alabaster.mae + pkgdesc = Load and Save MultiAssayExperiments + pkgver = 1.0.0 + pkgrel = 1 + url = https://bioconductor.org/packages/alabaster.mae + arch = any + license = MIT + checkdepends = r-biocparallel + checkdepends = r-testthat + depends = r-alabaster.base + depends = r-alabaster.se + depends = r-multiassayexperiment + depends = r-s4vectors + optdepends = r-biocparallel + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-summarizedexperiment + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/alabaster.mae_1.0.0.tar.gz + md5sums = f6eceed081467ce7d72c747bb1a0d11a + sha256sums = 23753b98df2931f2a04a091b27c5a39a6006b2a47bd052500442814ed69f427a + +pkgname = r-alabaster.mae diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..9344f9f2d77c --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,50 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=alabaster.mae +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Load and Save MultiAssayExperiments" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-alabaster.base + r-alabaster.se + r-multiassayexperiment + r-s4vectors +) +checkdepends=( + r-biocparallel + r-testthat +) +optdepends=( + r-biocparallel + r-biocstyle + r-knitr + r-rmarkdown + r-summarizedexperiment + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('f6eceed081467ce7d72c747bb1a0d11a') +sha256sums=('23753b98df2931f2a04a091b27c5a39a6006b2a47bd052500442814ed69f427a') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} |