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author | Pekka Ristola | 2023-10-15 11:43:47 +0300 |
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committer | Pekka Ristola | 2023-10-15 11:43:47 +0300 |
commit | 8f43db336f6e08501b31e657e8ea6563dd85a840 (patch) | |
tree | d480b4349847d0575d6233e5d14c930f74019bb2 | |
download | aur-8f43db336f6e08501b31e657e8ea6563dd85a840.tar.gz |
Version 1.0.0
-rw-r--r-- | .SRCINFO | 26 | ||||
-rw-r--r-- | PKGBUILD | 52 |
2 files changed, 78 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..2e0d5b7290d9 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,26 @@ +pkgbase = r-alabaster.se + pkgdesc = Load and Save SummarizedExperiments from File + pkgver = 1.0.0 + pkgrel = 1 + url = https://bioconductor.org/packages/alabaster.se + arch = any + license = MIT + checkdepends = r-testthat + depends = r-alabaster.base + depends = r-alabaster.matrix + depends = r-alabaster.ranges + depends = r-biocgenerics + depends = r-genomicranges + depends = r-iranges + depends = r-s4vectors + depends = r-summarizedexperiment + optdepends = r-biocstyle + optdepends = r-jsonlite + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/alabaster.se_1.0.0.tar.gz + md5sums = e93f0f6699394a9fbb4b8048567a5538 + sha256sums = c1cc75f13ae108b5631c5d07a3517accdafe18269b3ff78f8270e2a069fb0775 + +pkgname = r-alabaster.se diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..9dd6f1b4bdd5 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,52 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=alabaster.se +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Load and Save SummarizedExperiments from File" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-alabaster.base + r-alabaster.matrix + r-alabaster.ranges + r-biocgenerics + r-genomicranges + r-iranges + r-s4vectors + r-summarizedexperiment +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-jsonlite + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('e93f0f6699394a9fbb4b8048567a5538') +sha256sums=('c1cc75f13ae108b5631c5d07a3517accdafe18269b3ff78f8270e2a069fb0775') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} |