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author | Pekka Ristola | 2023-10-15 12:18:22 +0300 |
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committer | Pekka Ristola | 2023-10-15 12:18:22 +0300 |
commit | c0f6a6a80b7211d5efe761a90f4cbc3dc495cf27 (patch) | |
tree | 17a54eb0e8bce93dd618a863ecb8dd75b00f324a | |
download | aur-c0f6a6a80b7211d5efe761a90f4cbc3dc495cf27.tar.gz |
Version 1.0.0
-rw-r--r-- | .SRCINFO | 27 | ||||
-rw-r--r-- | PKGBUILD | 53 |
2 files changed, 80 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..af83c2eb5169 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,27 @@ +pkgbase = r-alabaster.spatial + pkgdesc = Save and Load Spatial 'Omics Data to/from File + pkgver = 1.0.0 + pkgrel = 1 + url = https://bioconductor.org/packages/alabaster.spatial + arch = any + license = MIT + checkdepends = r-png + checkdepends = r-testthat + depends = r-alabaster.base + depends = r-alabaster.sce + depends = r-jsonlite + depends = r-s4vectors + depends = r-spatialexperiment + depends = r-summarizedexperiment + optdepends = r-biocstyle + optdepends = r-digest + optdepends = r-knitr + optdepends = r-magick + optdepends = r-png + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/alabaster.spatial_1.0.0.tar.gz + md5sums = b8804e5e38ef912c8d1a04343f03f748 + sha256sums = 9588e61c71e5459f346141b1076bb9b55633606aa62b641404bb78513041dfa9 + +pkgname = r-alabaster.spatial diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..0e49bca20d8d --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,53 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=alabaster.spatial +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Save and Load Spatial 'Omics Data to/from File" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-alabaster.base + r-alabaster.sce + r-jsonlite + r-s4vectors + r-spatialexperiment + r-summarizedexperiment +) +checkdepends=( + r-png + r-testthat +) +optdepends=( + r-biocstyle + r-digest + r-knitr + r-magick + r-png + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('b8804e5e38ef912c8d1a04343f03f748') +sha256sums=('9588e61c71e5459f346141b1076bb9b55633606aa62b641404bb78513041dfa9') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} |