Version 1.0.0

2 files changed, 72 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..50ec268e4ab2
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,23 @@
+pkgbase = r-alabaster.vcf
+	pkgdesc = Save and Load Variant Data to/from File
+	pkgver = 1.0.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/alabaster.vcf
+	arch = any
+	license = MIT
+	checkdepends = r-testthat
+	depends = r-alabaster.base
+	depends = r-alabaster.se
+	depends = r-alabaster.string
+	depends = r-rsamtools
+	depends = r-s4vectors
+	depends = r-variantannotation
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/alabaster.vcf_1.0.0.tar.gz
+	md5sums = a512241aa940a4dd220d86da0b94aea4
+	sha256sums = 94b90cf7ecdf2a699e4e55a0a8a60da9ed5a85197ce7362eb0247df2f037255d
+
+pkgname = r-alabaster.vcf
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..b02adcf189b7
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=alabaster.vcf
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Save and Load Variant Data to/from File"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(MIT)
+depends=(
+  r-alabaster.base
+  r-alabaster.se
+  r-alabaster.string
+  r-rsamtools
+  r-s4vectors
+  r-variantannotation
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('a512241aa940a4dd220d86da0b94aea4')
+sha256sums=('94b90cf7ecdf2a699e4e55a0a8a60da9ed5a85197ce7362eb0247df2f037255d')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}