summarylogtreecommitdiffstats
diff options
context:
space:
mode:
authorSukanka2022-06-06 01:26:37 +0800
committerSukanka2022-06-06 01:26:37 +0800
commit884f91fc62b21481df51ea483e8cac21fc403ee9 (patch)
tree1cd674da3ab51d3996805c0be700a8200edebfde
downloadaur-884f91fc62b21481df51ea483e8cac21fc403ee9.tar.gz
add r-alphabeta
-rw-r--r--.SRCINFO24
-rw-r--r--PKGBUILD40
2 files changed, 64 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..3aed830cb756
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,24 @@
+pkgbase = r-alphabeta
+ pkgdesc = Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
+ pkgver = 1.10.0
+ pkgrel = 1
+ url = https://bioconductor.org/packages/AlphaBeta
+ arch = any
+ license = GPL
+ depends = r
+ depends = r-biocparallel
+ depends = r-data.table
+ depends = r-dplyr
+ depends = r-expm
+ depends = r-ggplot2
+ depends = r-gtools
+ depends = r-igraph
+ depends = r-optimx
+ depends = r-plotly
+ depends = r-stringr
+ optdepends = r-knitr
+ optdepends = r-rmarkdown
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/AlphaBeta_1.10.0.tar.gz
+ sha256sums = 4fc5d4241edbb6ecb13d7ca675ed3cade2a8e54a88e5f70cb54f00555fcc6dc6
+
+pkgname = r-alphabeta
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..2583ba5de909
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,40 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=AlphaBeta
+_pkgver=1.10.0
+pkgname=r-${_pkgname,,}
+pkgver=1.10.0
+pkgrel=1
+pkgdesc='Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+ r
+ r-biocparallel
+ r-data.table
+ r-dplyr
+ r-expm
+ r-ggplot2
+ r-gtools
+ r-igraph
+ r-optimx
+ r-plotly
+ r-stringr
+)
+optdepends=(
+ r-knitr
+ r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('4fc5d4241edbb6ecb13d7ca675ed3cade2a8e54a88e5f70cb54f00555fcc6dc6')
+
+build() {
+ R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+ install -dm0755 "${pkgdir}/usr/lib/R/library"
+ cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: