add r-alpine

2 files changed, 82 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..ca5b72370ce0
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,33 @@
+pkgbase = r-alpine
+	pkgdesc = alpine
+	pkgver = 1.22.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/alpine
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biostrings
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicfeatures
+	depends = r-genomicranges
+	depends = r-graph
+	depends = r-iranges
+	depends = r-rbgl
+	depends = r-rsamtools
+	depends = r-s4vectors
+	depends = r-speedglm
+	depends = r-stringr
+	depends = r-summarizedexperiment
+	optdepends = r-alpinedata
+	optdepends = r-bsgenome.hsapiens.ncbi.grch38
+	optdepends = r-ensembldb
+	optdepends = r-knitr
+	optdepends = r-markdown
+	optdepends = r-rcolorbrewer
+	optdepends = r-rtracklayer
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/alpine_1.22.0.tar.gz
+	sha256sums = 69375e0626d54e3bc160758542b9ed496a3bbf1456cf51714eb5c0a9788781da
+
+pkgname = r-alpine
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d2255d3b1a11
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=alpine
+_pkgver=1.22.0
+pkgname=r-${_pkgname,,}
+pkgver=1.22.0
+pkgrel=1
+pkgdesc='alpine'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biostrings
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicfeatures
+  r-genomicranges
+  r-graph
+  r-iranges
+  r-rbgl
+  r-rsamtools
+  r-s4vectors
+  r-speedglm
+  r-stringr
+  r-summarizedexperiment
+)
+optdepends=(
+  r-alpinedata
+  r-bsgenome.hsapiens.ncbi.grch38
+  r-ensembldb
+  r-knitr
+  r-markdown
+  r-rcolorbrewer
+  r-rtracklayer
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('69375e0626d54e3bc160758542b9ed496a3bbf1456cf51714eb5c0a9788781da')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: