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| author | Sukanka | 2022-06-06 01:33:59 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 01:33:59 +0800 |
| commit | 90734c71aaf7ba34fbf02744d1fd8d445655fad5 (patch) | |
| tree | fbe3a2487ced165c59e41671ed714f7b87b4016c | |
| download | aur-90734c71aaf7ba34fbf02744d1fd8d445655fad5.tar.gz | |
add r-annmap
| -rw-r--r-- | .SRCINFO | 24 | ||||
| -rw-r--r-- | PKGBUILD | 40 |
2 files changed, 64 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..4c63cdd515ca --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,24 @@ +pkgbase = r-annmap + pkgdesc = Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis. + pkgver = 1.38.0 + pkgrel = 1 + url = https://bioconductor.org/packages/annmap + arch = any + license = GPL + depends = r + depends = r-biobase + depends = r-biocgenerics + depends = r-dbi + depends = r-digest + depends = r-genefilter + depends = r-genomicranges + depends = r-iranges + depends = r-rmysql + depends = r-rsamtools + optdepends = r-gviz + optdepends = r-rjson + optdepends = r-runit + source = https://bioconductor.org/packages/release/bioc/src/contrib/annmap_1.38.0.tar.gz + sha256sums = bbc7353df350d563c0e11d59f44deab621876708ca38cdfeccf9a828d15a987b + +pkgname = r-annmap diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..5e54392f1bca --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,40 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=annmap +_pkgver=1.38.0 +pkgname=r-${_pkgname,,} +pkgver=1.38.0 +pkgrel=1 +pkgdesc='Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biobase + r-biocgenerics + r-dbi + r-digest + r-genefilter + r-genomicranges + r-iranges + r-rmysql + r-rsamtools +) +optdepends=( + r-gviz + r-rjson + r-runit +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('bbc7353df350d563c0e11d59f44deab621876708ca38cdfeccf9a828d15a987b') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |