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authorSukanka2022-06-06 01:35:39 +0800
committerSukanka2022-06-06 01:35:39 +0800
commit646d4f235b9918e6dce8a53385599c3d6d633dfd (patch)
treed4f00127794a5746c5e8120b6cbe8cef37d56aed
downloadaur-646d4f235b9918e6dce8a53385599c3d6d633dfd.tar.gz
add r-annotationforge
-rw-r--r--.SRCINFO35
-rw-r--r--PKGBUILD51
2 files changed, 86 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 00000000000..f0bec43a09d
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,35 @@
+pkgbase = r-annotationforge
+ pkgdesc = Tools for building SQLite-based annotation data packages
+ pkgver = 1.38.0
+ pkgrel = 1
+ url = https://bioconductor.org/packages/AnnotationForge
+ arch = any
+ license = Artistic2.0
+ depends = r
+ depends = r-annotationdbi
+ depends = r-biobase
+ depends = r-biocgenerics
+ depends = r-dbi
+ depends = r-rcurl
+ depends = r-rsqlite
+ depends = r-s4vectors
+ depends = r-xml
+ optdepends = r-affy
+ optdepends = r-biocfilecache
+ optdepends = r-biocmanager
+ optdepends = r-biocstyle
+ optdepends = r-biomart
+ optdepends = r-biostrings
+ optdepends = r-genomeinfodb
+ optdepends = r-go.db
+ optdepends = r-hgu95av2.db
+ optdepends = r-homo.sapiens
+ optdepends = r-httr
+ optdepends = r-human.db0
+ optdepends = r-knitr
+ optdepends = r-markdown
+ optdepends = r-org.hs.eg.db
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/AnnotationForge_1.38.0.tar.gz
+ sha256sums = e8fffd592a364e0154c255964cbfd198b6f6f6b227c83ca4f4efa9d69b722ca3
+
+pkgname = r-annotationforge
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 00000000000..2c9f9c02905
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,51 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=AnnotationForge
+_pkgver=1.38.0
+pkgname=r-${_pkgname,,}
+pkgver=1.38.0
+pkgrel=1
+pkgdesc='Tools for building SQLite-based annotation data packages'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+ r
+ r-annotationdbi
+ r-biobase
+ r-biocgenerics
+ r-dbi
+ r-rcurl
+ r-rsqlite
+ r-s4vectors
+ r-xml
+)
+optdepends=(
+ r-affy
+ r-biocfilecache
+ r-biocmanager
+ r-biocstyle
+ r-biomart
+ r-biostrings
+ r-genomeinfodb
+ r-go.db
+ r-hgu95av2.db
+ r-homo.sapiens
+ r-httr
+ r-human.db0
+ r-knitr
+ r-markdown
+ r-org.hs.eg.db
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('e8fffd592a364e0154c255964cbfd198b6f6f6b227c83ca4f4efa9d69b722ca3')
+
+build() {
+ R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+ install -dm0755 "${pkgdir}/usr/lib/R/library"
+ cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: