add r-apalyzer

2 files changed, 88 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..9e626b646693
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,36 @@
+pkgbase = r-apalyzer
+	pkgdesc = A toolkit for APA analysis using RNA-seq data
+	pkgver = 1.10.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/APAlyzer
+	arch = any
+	license = LGPL
+	depends = r
+	depends = r-deseq2
+	depends = r-dplyr
+	depends = r-ensembldb
+	depends = r-genomicalignments
+	depends = r-genomicfeatures
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-ggrepel
+	depends = r-repmis
+	depends = r-rsamtools
+	depends = r-rsubread
+	depends = r-rtracklayer
+	depends = r-summarizedexperiment
+	depends = r-tidyr
+	depends = r-variantannotation
+	depends = r-hybridmtest
+	optdepends = r-annotationdbi
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-org.mm.eg.db
+	optdepends = r-pasillabamsubset
+	optdepends = r-rmarkdown
+	optdepends = r-tbx20bamsubset
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/APAlyzer_1.10.0.tar.gz
+	sha256sums = 004ce480ece61f5d605f4ce09b35757066eaac7dba9ffd02607caa3099913df6
+
+pkgname = r-apalyzer
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..57f52a258d76
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=APAlyzer
+_pkgver=1.10.0
+pkgname=r-${_pkgname,,}
+pkgver=1.10.0
+pkgrel=1
+pkgdesc='A toolkit for APA analysis using RNA-seq data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+  r-deseq2
+  r-dplyr
+  r-ensembldb
+  r-genomicalignments
+  r-genomicfeatures
+  r-genomicranges
+  r-ggplot2
+  r-ggrepel
+  r-repmis
+  r-rsamtools
+  r-rsubread
+  r-rtracklayer
+  r-summarizedexperiment
+  r-tidyr
+  r-variantannotation
+  r-hybridmtest
+)
+optdepends=(
+  r-annotationdbi
+  r-biocstyle
+  r-knitr
+  r-org.mm.eg.db
+  r-pasillabamsubset
+  r-rmarkdown
+  r-tbx20bamsubset
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('004ce480ece61f5d605f4ce09b35757066eaac7dba9ffd02607caa3099913df6')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: