add r-artms

2 files changed, 112 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..079fe4b070b4
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,48 @@
+pkgbase = r-artms
+	pkgdesc = Analytical R tools for Mass Spectrometry
+	pkgver = 1.14.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/artMS
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-annotationdbi
+	depends = r-bit64
+	depends = r-circlize
+	depends = r-corrplot
+	depends = r-data.table
+	depends = r-dplyr
+	depends = r-getopt
+	depends = r-ggdendro
+	depends = r-ggplot2
+	depends = r-ggrepel
+	depends = r-gplots
+	depends = r-limma
+	depends = r-msstats
+	depends = r-openxlsx
+	depends = r-org.hs.eg.db
+	depends = r-pheatmap
+	depends = r-plotly
+	depends = r-plyr
+	depends = r-rcolorbrewer
+	depends = r-scales
+	depends = r-seqinr
+	depends = r-stringr
+	depends = r-tidyr
+	depends = r-upsetr
+	depends = r-venndiagram
+	depends = r-yaml
+	optdepends = r-biocstyle
+	optdepends = r-complexheatmap
+	optdepends = r-factoextra
+	optdepends = r-factominer
+	optdepends = r-gprofiler
+	optdepends = r-knitr
+	optdepends = r-org.mm.eg.db
+	optdepends = r-performanceanalytics
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/artMS_1.14.0.tar.gz
+	sha256sums = 597fcbd8b367a46aa6dae45aaf7fd96a057e13e9550f3811b86f4e692fddac55
+
+pkgname = r-artms
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..28245e00f67b
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,64 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=artMS
+_pkgver=1.14.0
+pkgname=r-${_pkgname,,}
+pkgver=1.14.0
+pkgrel=1
+pkgdesc='Analytical R tools for Mass Spectrometry'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-annotationdbi
+  r-bit64
+  r-circlize
+  r-corrplot
+  r-data.table
+  r-dplyr
+  r-getopt
+  r-ggdendro
+  r-ggplot2
+  r-ggrepel
+  r-gplots
+  r-limma
+  r-msstats
+  r-openxlsx
+  r-org.hs.eg.db
+  r-pheatmap
+  r-plotly
+  r-plyr
+  r-rcolorbrewer
+  r-scales
+  r-seqinr
+  r-stringr
+  r-tidyr
+  r-upsetr
+  r-venndiagram
+  r-yaml
+)
+optdepends=(
+  r-biocstyle
+  r-complexheatmap
+  r-factoextra
+  r-factominer
+  r-gprofiler
+  r-knitr
+  r-org.mm.eg.db
+  r-performanceanalytics
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('597fcbd8b367a46aa6dae45aaf7fd96a057e13e9550f3811b86f4e692fddac55')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: