add r-atacseqqc

2 files changed, 92 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..9f4bca679dd5
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,38 @@
+pkgbase = r-atacseqqc
+	pkgdesc = ATAC-seq Quality Control
+	pkgver = 1.20.2
+	pkgrel = 1
+	url = https://bioconductor.org/packages/ATACseqQC
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biostrings
+	depends = r-bsgenome
+	depends = r-chippeakanno
+	depends = r-edger
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicranges
+	depends = r-genomicscores
+	depends = r-iranges
+	depends = r-limma
+	depends = r-motifstack
+	depends = r-preseqr
+	depends = r-randomforest
+	depends = r-rsamtools
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome.hsapiens.ucsc.hg19
+	optdepends = r-knitr
+	optdepends = r-motifdb
+	optdepends = r-phastcons100way.ucsc.hg19
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-trackviewer
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/ATACseqQC_1.20.2.tar.gz
+	sha256sums = 17cf6c17610c287a187010f30b880ae57e5e9f9ef42b3d018fec01c92ab0474a
+
+pkgname = r-atacseqqc
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..08b0c550013b
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=ATACseqQC
+_pkgver=1.20.2
+pkgname=r-${_pkgname,,}
+pkgver=1.20.2
+pkgrel=1
+pkgdesc='ATAC-seq Quality Control'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-biostrings
+  r-bsgenome
+  r-chippeakanno
+  r-edger
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicranges
+  r-genomicscores
+  r-iranges
+  r-limma
+  r-motifstack
+  r-preseqr
+  r-randomforest
+  r-rsamtools
+  r-rtracklayer
+  r-s4vectors
+)
+optdepends=(
+  r-biocstyle
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-knitr
+  r-motifdb
+  r-phastcons100way.ucsc.hg19
+  r-rmarkdown
+  r-testthat
+  r-trackviewer
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('17cf6c17610c287a187010f30b880ae57e5e9f9ef42b3d018fec01c92ab0474a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: