diff options
| author | Sukanka | 2022-06-06 02:10:07 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 02:10:07 +0800 |
| commit | 283ec9f042e25493d859df751103d23e452ecb72 (patch) | |
| tree | 94a095ffc0e8c8a4eb000c01559f5fb872bf3f87 | |
| download | aur-283ec9f042e25493d859df751103d23e452ecb72.tar.gz | |
add r-baalchip
| -rw-r--r-- | .SRCINFO | 29 | ||||
| -rw-r--r-- | PKGBUILD | 45 |
2 files changed, 74 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..a694828d3a99 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,29 @@ +pkgbase = r-baalchip + pkgdesc = BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes + pkgver = 1.22.0 + pkgrel = 1 + url = https://bioconductor.org/packages/BaalChIP + arch = any + license = Artistic2.0 + depends = r + depends = r-coda + depends = r-doby + depends = r-doparallel + depends = r-foreach + depends = r-genomeinfodb + depends = r-genomicalignments + depends = r-genomicranges + depends = r-ggplot2 + depends = r-iranges + depends = r-reshape2 + depends = r-rsamtools + depends = r-scales + optdepends = r-biocgenerics + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-runit + source = https://bioconductor.org/packages/release/bioc/src/contrib/BaalChIP_1.22.0.tar.gz + sha256sums = d8bc23342aafb4023541fcf412ff88315d136b523046d97b72e579276c9a1c0b + +pkgname = r-baalchip diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..842bcee30fb6 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,45 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=BaalChIP +_pkgver=1.22.0 +pkgname=r-${_pkgname,,} +pkgver=1.22.0 +pkgrel=1 +pkgdesc='BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-coda + r-doby + r-doparallel + r-foreach + r-genomeinfodb + r-genomicalignments + r-genomicranges + r-ggplot2 + r-iranges + r-reshape2 + r-rsamtools + r-scales +) +optdepends=( + r-biocgenerics + r-biocstyle + r-knitr + r-rmarkdown + r-runit +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('d8bc23342aafb4023541fcf412ff88315d136b523046d97b72e579276c9a1c0b') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |