add r-bamsignals

2 files changed, 65 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..0c53e11ae26a
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,24 @@
+pkgbase = r-bamsignals
+	pkgdesc = Extract read count signals from bam files
+	pkgver = 1.28.0
+	pkgrel = 3
+	url = https://bioconductor.org/packages/bamsignals
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-rcpp
+	depends = r-rhtslib
+	depends = r-zlibbioc
+	depends = make
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-rsamtools
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/bamsignals_1.28.0.tar.gz
+	sha256sums = 7ea6ee5fcbc6aa916771a271fa012adaed7e753ee79ab54a8694c12410ee8b7b
+
+pkgname = r-bamsignals
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..37bea9e20a07
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,41 @@
+# system requirements: GNU make
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=bamsignals
+_pkgver=1.28.0
+pkgname=r-${_pkgname,,}
+pkgver=1.28.0
+pkgrel=3
+pkgdesc='Extract read count signals from bam files'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-genomicranges
+  r-iranges
+  r-rcpp
+  r-rhtslib
+  r-zlibbioc
+  make
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-rsamtools
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('7ea6ee5fcbc6aa916771a271fa012adaed7e753ee79ab54a8694c12410ee8b7b')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: