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authorSukanka2022-06-06 02:19:16 +0800
committerSukanka2022-06-06 02:19:16 +0800
commit783d8cbf6f5e9e1df039e26019d262fd93b76800 (patch)
tree8eb4879caf378db6dbfc62c200dcaaf6a1e32a12
downloadaur-783d8cbf6f5e9e1df039e26019d262fd93b76800.tar.gz
add r-basics
-rw-r--r--.SRCINFO37
-rw-r--r--PKGBUILD54
2 files changed, 91 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 00000000000..080a7093f1e
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,37 @@
+pkgbase = r-basics
+ pkgdesc = Bayesian Analysis of Single-Cell Sequencing data
+ pkgver = 2.8.0
+ pkgrel = 1
+ url = https://bioconductor.org/packages/BASiCS
+ arch = x86_64
+ license = GPL
+ depends = r
+ depends = r-assertthat
+ depends = r-biobase
+ depends = r-biocgenerics
+ depends = r-biocparallel
+ depends = r-coda
+ depends = r-cowplot
+ depends = r-ggextra
+ depends = r-ggplot2
+ depends = r-hexbin
+ depends = r-matrixstats
+ depends = r-rcpp
+ depends = r-rcpparmadillo
+ depends = r-reshape2
+ depends = r-s4vectors
+ depends = r-scran
+ depends = r-scuttle
+ depends = r-singlecellexperiment
+ depends = r-summarizedexperiment
+ depends = r-viridis
+ depends = gcc
+ optdepends = r-biocstyle
+ optdepends = r-knitr
+ optdepends = r-magick
+ optdepends = r-rmarkdown
+ optdepends = r-testthat
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/BASiCS_2.8.0.tar.gz
+ sha256sums = d6c603246c5b3c641d4d5aef0d2d0285ff2e46246fc8ab94880c8bcd7a20e019
+
+pkgname = r-basics
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 00000000000..8eefccaad66
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=BASiCS
+_pkgver=2.8.0
+pkgname=r-${_pkgname,,}
+pkgver=2.8.0
+pkgrel=1
+pkgdesc='Bayesian Analysis of Single-Cell Sequencing data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+ r
+ r-assertthat
+ r-biobase
+ r-biocgenerics
+ r-biocparallel
+ r-coda
+ r-cowplot
+ r-ggextra
+ r-ggplot2
+ r-hexbin
+ r-matrixstats
+ r-rcpp
+ r-rcpparmadillo
+ r-reshape2
+ r-s4vectors
+ r-scran
+ r-scuttle
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-viridis
+ gcc
+)
+optdepends=(
+ r-biocstyle
+ r-knitr
+ r-magick
+ r-rmarkdown
+ r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('d6c603246c5b3c641d4d5aef0d2d0285ff2e46246fc8ab94880c8bcd7a20e019')
+
+build() {
+ R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+ install -dm0755 "${pkgdir}/usr/lib/R/library"
+ cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: