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author | Pekka Ristola | 2023-11-29 13:26:17 +0200 |
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committer | Pekka Ristola | 2023-11-29 13:26:17 +0200 |
commit | 3f4974da63cc006c77a66f1e4d78e944afcebf7a (patch) | |
tree | eeab2e82eb9ac9ecc6ab2c26e5c5e1204335a487 | |
download | aur-3f4974da63cc006c77a66f1e4d78e944afcebf7a.tar.gz |
Version 1.4.0
-rw-r--r-- | .SRCINFO | 29 | ||||
-rw-r--r-- | PKGBUILD | 54 |
2 files changed, 83 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..d9a991e19368 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,29 @@ +pkgbase = r-basicstan + pkgdesc = Stan implementation of BASiCS + pkgver = 1.4.0 + pkgrel = 1 + url = https://bioconductor.org/packages/BASiCStan + arch = x86_64 + license = GPL3 + checkdepends = r-testthat + makedepends = r-bh + makedepends = r-rcppeigen + makedepends = r-stanheaders + depends = r-basics + depends = r-glmgampoi + depends = r-rcpp + depends = r-rcppparallel + depends = r-rstan + depends = r-rstantools + depends = r-scran + depends = r-scuttle + depends = r-singlecellexperiment + depends = r-summarizedexperiment + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/BASiCStan_1.4.0.tar.gz + md5sums = b7179ffcf510240c0c3cc6e8e31b60d7 + sha256sums = 3176517994f10d6a9dd9571ae1d51d87e9ef2d5aed81da215b5a195ba516ea06 + +pkgname = r-basicstan diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..608f4e71f04a --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,54 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=BASiCStan +_pkgver=1.4.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Stan implementation of BASiCS" +arch=(x86_64) +url="https://bioconductor.org/packages/${_pkgname}" +license=(GPL3) +depends=( + r-basics + r-glmgampoi + r-rcpp + r-rcppparallel + r-rstan + r-rstantools + r-scran + r-scuttle + r-singlecellexperiment + r-summarizedexperiment +) +makedepends=( + r-bh + r-rcppeigen + r-stanheaders +) +checkdepends=( + r-testthat +) +optdepends=( + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('b7179ffcf510240c0c3cc6e8e31b60d7') +sha256sums=('3176517994f10d6a9dd9571ae1d51d87e9ef2d5aed81da215b5a195ba516ea06') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |