add r-beachmat

2 files changed, 63 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..4fbcaf7e145d
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,23 @@
+pkgbase = r-beachmat
+	pkgdesc = Compiling Bioconductor to Handle Each Matrix Type
+	pkgver = 2.12.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/beachmat
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-delayedarray
+	depends = r-rcpp
+	depends = gcc
+	optdepends = r-biocparallel
+	optdepends = r-biocstyle
+	optdepends = r-hdf5array
+	optdepends = r-knitr
+	optdepends = r-rcmdcheck
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/beachmat_2.12.0.tar.gz
+	sha256sums = 0c292f7368fb6a7d0809f332a02576d6c6cdf3b86ae22fa493ae062ce5de8639
+
+pkgname = r-beachmat
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..da3eb0a3681f
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,40 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=beachmat
+_pkgver=2.12.0
+pkgname=r-${_pkgname,,}
+pkgver=2.12.0
+pkgrel=1
+pkgdesc='Compiling Bioconductor to Handle Each Matrix Type'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-delayedarray
+  r-rcpp
+  gcc
+)
+optdepends=(
+  r-biocparallel
+  r-biocstyle
+  r-hdf5array
+  r-knitr
+  r-rcmdcheck
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('0c292f7368fb6a7d0809f332a02576d6c6cdf3b86ae22fa493ae062ce5de8639')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: