add r-beadarray

2 files changed, 87 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..d3ed3fac4b82
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,35 @@
+pkgbase = r-beadarray
+	pkgdesc = Quality assessment and low-level analysis for Illumina BeadArray data
+	pkgver = 2.46.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/beadarray
+	arch = x86_64
+	license = MIT
+	depends = r
+	depends = r-annotationdbi
+	depends = r-beaddatapackr
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-hexbin
+	depends = r-illuminaio
+	depends = r-iranges
+	depends = r-limma
+	depends = r-reshape2
+	optdepends = r-affy
+	optdepends = r-beadarrayexampledata
+	optdepends = r-biocstyle
+	optdepends = r-ggbio
+	optdepends = r-gridextra
+	optdepends = r-hwriter
+	optdepends = r-illuminahumanv3.db
+	optdepends = r-knitr
+	optdepends = r-lumi
+	optdepends = r-nozzle.r1
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	optdepends = r-vsn
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/beadarray_2.46.0.tar.gz
+	sha256sums = 5eee2652d15de2ee28411d7bdba7946be10ee899a88312b65e1fb0c9aa43c326
+
+pkgname = r-beadarray
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..e12046333ab3
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=beadarray
+_pkgver=2.46.0
+pkgname=r-${_pkgname,,}
+pkgver=2.46.0
+pkgrel=1
+pkgdesc='Quality assessment and low-level analysis for Illumina BeadArray data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-annotationdbi
+  r-beaddatapackr
+  r-biobase
+  r-biocgenerics
+  r-genomicranges
+  r-ggplot2
+  r-hexbin
+  r-illuminaio
+  r-iranges
+  r-limma
+  r-reshape2
+)
+optdepends=(
+  r-affy
+  r-beadarrayexampledata
+  r-biocstyle
+  r-ggbio
+  r-gridextra
+  r-hwriter
+  r-illuminahumanv3.db
+  r-knitr
+  r-lumi
+  r-nozzle.r1
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+  r-vsn
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('5eee2652d15de2ee28411d7bdba7946be10ee899a88312b65e1fb0c9aa43c326')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: