add r-beclear

2 files changed, 69 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..48d50a36d396
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,26 @@
+pkgbase = r-beclear
+	pkgdesc = Correction of batch effects in DNA methylation data
+	pkgver = 2.12.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/BEclear
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-abind
+	depends = r-biocparallel
+	depends = r-data.table
+	depends = r-futile.logger
+	depends = r-outliers
+	depends = r-rcpp
+	depends = r-rdpack
+	depends = r-dixontest
+	depends = gcc
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-pander
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/BEclear_2.12.0.tar.gz
+	sha256sums = 255c912c7265bfbafcf0187d4c73fe2382a45dc35694379e40a78955adf38374
+
+pkgname = r-beclear
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..e0801dad5b7a
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,43 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=BEclear
+_pkgver=2.12.0
+pkgname=r-${_pkgname,,}
+pkgver=2.12.0
+pkgrel=1
+pkgdesc='Correction of batch effects in DNA methylation data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-abind
+  r-biocparallel
+  r-data.table
+  r-futile.logger
+  r-outliers
+  r-rcpp
+  r-rdpack
+  r-dixontest
+  gcc
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-pander
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('255c912c7265bfbafcf0187d4c73fe2382a45dc35694379e40a78955adf38374')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: