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| author | Sukanka | 2022-06-06 04:42:47 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 04:42:47 +0800 |
| commit | 77084a90f37a88faf616639c7273fcafc4e717a2 (patch) | |
| tree | 35ea48146149b27b2f5fb96a4a05632cbfe8d08a | |
| download | aur-77084a90f37a88faf616639c7273fcafc4e717a2.tar.gz | |
add r-bgeedb
| -rw-r--r-- | .SRCINFO | 28 | ||||
| -rw-r--r-- | PKGBUILD | 44 |
2 files changed, 72 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..9815bf3318b8 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,28 @@ +pkgbase = r-bgeedb + pkgdesc = Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology + pkgver = 2.22.0 + pkgrel = 1 + url = https://bioconductor.org/packages/BgeeDB + arch = any + license = GPL + depends = r + depends = r-biobase + depends = r-curl + depends = r-data.table + depends = r-digest + depends = r-dplyr + depends = r-graph + depends = r-r.utils + depends = r-rcurl + depends = r-rsqlite + depends = r-tidyr + depends = r-topgo + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-markdown + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/BgeeDB_2.22.0.tar.gz + sha256sums = 4cffacf66fe3ccb1b68abfa03732a53fb641959fcdc2a6b1922a45d407997f24 + +pkgname = r-bgeedb diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..9390ee9c6be4 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,44 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=BgeeDB +_pkgver=2.22.0 +pkgname=r-${_pkgname,,} +pkgver=2.22.0 +pkgrel=1 +pkgdesc='Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biobase + r-curl + r-data.table + r-digest + r-dplyr + r-graph + r-r.utils + r-rcurl + r-rsqlite + r-tidyr + r-topgo +) +optdepends=( + r-biocstyle + r-knitr + r-markdown + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('4cffacf66fe3ccb1b68abfa03732a53fb641959fcdc2a6b1922a45d407997f24') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |