Version 1.4.0

2 files changed, 75 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..fba9ad9c8532
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,26 @@
+pkgbase = r-biocfhir
+	pkgdesc = Illustration of FHIR ingestion and transformation using R
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/BiocFHIR
+	arch = any
+	license = Artistic2.0
+	checkdepends = r-testthat
+	depends = r-biocbaseutils
+	depends = r-dplyr
+	depends = r-dt
+	depends = r-graph
+	depends = r-jsonlite
+	depends = r-shiny
+	depends = r-tidyr
+	depends = r-visnetwork
+	optdepends = r-biocstyle
+	optdepends = r-igraph
+	optdepends = r-knitr
+	optdepends = r-rjsoncons
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/BiocFHIR_1.4.0.tar.gz
+	md5sums = 788951417cde10ad9434dd443db47f80
+	sha256sums = 7c181c170fc085c884ec4b1bc4a53cd402e18c2a99691a2ce5feb7799827d7eb
+
+pkgname = r-biocfhir
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..49de09d769b7
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=BiocFHIR
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Illustration of FHIR ingestion and transformation using R"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(Artistic2.0)
+depends=(
+  r-biocbaseutils
+  r-dplyr
+  r-dt
+  r-graph
+  r-jsonlite
+  r-shiny
+  r-tidyr
+  r-visnetwork
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-igraph
+  r-knitr
+  r-rjsoncons
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('788951417cde10ad9434dd443db47f80')
+sha256sums=('7c181c170fc085c884ec4b1bc4a53cd402e18c2a99691a2ce5feb7799827d7eb')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla test.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}