upgpkg: r-biocparallel 1.34.2-1

upstream release

2 files changed, 36 insertions, 41 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 238b43f40dd6..3cc4e85ea004 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,37 +1,34 @@
 pkgbase = r-biocparallel
 	pkgdesc = Bioconductor facilities for parallel evaluation
-	pkgver = 1.32.6
+	pkgver = 1.34.2
 	pkgrel = 1
 	url = https://bioconductor.org/packages/release/bioc/html/BiocParallel.html
 	arch = i686
 	arch = x86_64
 	license = GPL2
 	license = GPL3
-	makedepends = r-cpp11
 	depends = r>=3.5.0
+	depends = r-bh
+	depends = r-cpp11
 	depends = r-futile.logger
 	depends = r-snow
-	depends = r-bh
-	optdepends = r-biocgenerics
-	optdepends = r-foreach
-	optdepends = r-batchjobs
+	optdepends = r-batchtools
 	optdepends = r-bbmisc
+	optdepends = r-biocgenerics
+	optdepends = r-biocstyle
+	optdepends = r-data.table
 	optdepends = r-doparallel
-	optdepends = r-rmpi
+	optdepends = r-foreach
+	optdepends = r-genomicalignments
 	optdepends = r-genomicranges
+	optdepends = r-knitr
 	optdepends = r-rnaseqdata.hnrnpc.bam.chr14
-	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
-	optdepends = r-variantannotation
 	optdepends = r-rsamtools
-	optdepends = r-genomicalignments
-	optdepends = r-shortread
-	optdepends = r-codetools
 	optdepends = r-runit
-	optdepends = r-biocstyle
-	optdepends = r-knitr
-	optdepends = r-batchtools
-	optdepends = r-data.table
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.32.6.tar.gz
-	b2sums = 3cca882014984bc6192e9bf2af3049342c617023e7abf93ec50380000d7a9847c8c3b2e4d400961983fc1dcd6a2340e2f04396fb2e53f790776bf57a47f0c269
+	optdepends = r-shortread
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	optdepends = r-variantannotation
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.34.2.tar.gz
+	b2sums = 752b3c1173b1c71ae6f2644b5836640ab30aecba99585629452e9b4fc9a921dffdd299046ca335f7117c177b3ff782d69388dc4ee8117d68f55e2f5fdfc562b2
 
 pkgname = r-biocparallel
diff --git a/PKGBUILD b/PKGBUILD
index 6aa7b723ec55..268b48d04ffa 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -3,46 +3,44 @@
 # Contributor: Grey Christoforo <first name at last name dot net>
 
 _bcname=BiocParallel
-_bcver=1.32.6
+_bcver=1.34.2
 pkgname=r-${_bcname,,}
-pkgver=${_bcver//[:-]/.}
-pkgrel=1
 pkgdesc="Bioconductor facilities for parallel evaluation"
-arch=(i686 x86_64)
 url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
-license=(GPL2 GPL3)
+pkgver=${_bcver//[:-]/.}
+pkgrel=1
+
+arch=("i686" "x86_64")
+license=("GPL2" "GPL3")
+
 depends=(
     "r>=3.5.0"
+    "r-bh"
+    "r-cpp11"
     "r-futile.logger"
     "r-snow"
-    "r-bh"
 )
 optdepends=(
-    "r-biocgenerics"
-    "r-foreach"
-    "r-batchjobs"
+    "r-batchtools"
     "r-bbmisc"
+    "r-biocgenerics"
+    "r-biocstyle"
+    "r-data.table"
     "r-doparallel"
-    "r-rmpi"
+    "r-foreach"
+    "r-genomicalignments"
     "r-genomicranges"
+    "r-knitr"
     "r-rnaseqdata.hnrnpc.bam.chr14"
-    "r-txdb.hsapiens.ucsc.hg19.knowngene"
-    "r-variantannotation"
     "r-rsamtools"
-    "r-genomicalignments"
-    "r-shortread"
-    "r-codetools"
     "r-runit"
-    "r-biocstyle"
-    "r-knitr"
-    "r-batchtools"
-    "r-data.table"
-)
-makedepends=(
-    "r-cpp11"
+    "r-shortread"
+    "r-txdb.hsapiens.ucsc.hg19.knowngene"
+    "r-variantannotation"
 )
+
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-b2sums=("3cca882014984bc6192e9bf2af3049342c617023e7abf93ec50380000d7a9847c8c3b2e4d400961983fc1dcd6a2340e2f04396fb2e53f790776bf57a47f0c269")
+b2sums=("752b3c1173b1c71ae6f2644b5836640ab30aecba99585629452e9b4fc9a921dffdd299046ca335f7117c177b3ff782d69388dc4ee8117d68f55e2f5fdfc562b2")
 
 build() {
   R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"