summarylogtreecommitdiffstats
diff options
context:
space:
mode:
authorViktor Drobot2021-12-01 21:50:26 +0300
committerViktor Drobot2021-12-01 21:50:26 +0300
commit405471cf2e5835fbfbab3ae1f728e4040e3c791e (patch)
treec69bc8237409938290f3e05679ff3a2f9f1b797b
parent98ac7df38655874ba0b7e5cfad9c479186982242 (diff)
downloadaur-405471cf2e5835fbfbab3ae1f728e4040e3c791e.tar.gz
Update
-rw-r--r--.SRCINFO6
-rw-r--r--PKGBUILD11
2 files changed, 7 insertions, 10 deletions
diff --git a/.SRCINFO b/.SRCINFO
index c8f7ccf2a32e..22fae293684d 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
pkgbase = r-biocparallel
pkgdesc = Bioconductor facilities for parallel evaluation
- pkgver = 1.28.0
+ pkgver = 1.28.2
pkgrel = 1
url = https://bioconductor.org/packages/release/bioc/html/BiocParallel.html
arch = i686
@@ -30,7 +30,7 @@ pkgbase = r-biocparallel
optdepends = r-knitr
optdepends = r-batchtools
optdepends = r-data.table
- source = https://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.28.0.tar.gz
- sha256sums = 46e5bbdef307b354515c4650abbac1f697c4a6200c620002ff36f27be55d0f4b
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.28.2.tar.gz
+ sha256sums = 73237f9c69c905fde3e5d4a2e387ba21caca0fafa392eb87c1cf51d0ce670957
pkgname = r-biocparallel
diff --git a/PKGBUILD b/PKGBUILD
index 6d3581e81bca..10c570e1d646 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,7 +2,7 @@
# Contributor: Grey Christoforo <first name at last name dot net>
_bcname=BiocParallel
-_bcver=1.28.0
+_bcver=1.28.2
pkgname=r-${_bcname,,}
pkgver=${_bcver//[:-]/.}
pkgrel=1
@@ -13,17 +13,14 @@ license=(GPL2 GPL3)
depends=('r>=3.5.0' r-futile.logger r-snow r-bh)
optdepends=(r-biocgenerics r-foreach r-batchjobs r-bbmisc r-doparallel r-rmpi r-genomicranges r-rnaseqdata.hnrnpc.bam.chr14 r-txdb.hsapiens.ucsc.hg19.knowngene r-variantannotation r-rsamtools r-genomicalignments r-shortread r-codetools r-runit r-biocstyle r-knitr r-batchtools r-data.table)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-sha256sums=('46e5bbdef307b354515c4650abbac1f697c4a6200c620002ff36f27be55d0f4b')
+sha256sums=('73237f9c69c905fde3e5d4a2e387ba21caca0fafa392eb87c1cf51d0ce670957')
build() {
- cd "${srcdir}"
-
- R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l ${srcdir}
+ R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
}
package() {
- cd "${srcdir}"
-
install -dm0755 "${pkgdir}/usr/lib/R/library"
+
cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
}