Fixed PKGBUILD

3 files changed, 50 insertions, 21 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 72345f4e860d..411ca6501ef2 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,17 +1,38 @@
 pkgbase = r-biocparallel
 	pkgdesc = Bioconductor facilities for parallel evaluation
-	pkgver = 1.20.0
+	pkgver = 1.20.1
 	pkgrel = 1
 	url = https://bioconductor.org/packages/release/bioc/html/BiocParallel.html
+	arch = i686
 	arch = x86_64
-	license = Artistic-2.0
+	license = GPL2
+	license = GPL3
+	makedepends = gcc>=4.3
 	depends = r
+	depends = r-futile.logger
 	depends = r-snow
 	depends = r-bh
-	depends = r-futilelogger
-	depends = r-utils
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.20.0.tar.gz
-	sha1sums = ab035aff4cb307d0f13639d5e50818499556b737
+	optdepends = r-biocgenerics
+	optdepends = r-foreach
+	optdepends = r-batchjobs
+	optdepends = r-bbmisc
+	optdepends = r-doparallel
+	optdepends = r-rmpi
+	optdepends = r-genomicranges
+	optdepends = r-rnaseqdata.hnrnpc.bam.chr14
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	optdepends = r-variantannotation
+	optdepends = r-rsamtools
+	optdepends = r-genomicalignments
+	optdepends = r-shortread
+	optdepends = r-codetools
+	optdepends = r-runit
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-batchtools
+	optdepends = r-data.table
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.20.1.tar.gz
+	sha1sums = 99be1cf32bb153b958c6af5834e89f541b23876d
 
 pkgname = r-biocparallel
 
diff --git a/.gitignore b/.gitignore
deleted file mode 100644
index 6ae0b18a1f6c..000000000000
--- a/.gitignore
+++ /dev/null
@@ -1,4 +0,0 @@
-/pkg
-/src
-*.tar.gz
-*.tar.xz
diff --git a/PKGBUILD b/PKGBUILD
index b4aec22ab12b..5d0ead9e096f 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,19 +1,31 @@
+# Maintainer: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
 # Contributor: Grey Christoforo <first name at last name dot net>
+
+_bcname=BiocParallel
+_bcver=1.20.1
 pkgname=r-biocparallel
-_bc_name=BiocParallel
-pkgver=1.20.0
+pkgver=${_bcver//[:-]/.}
 pkgrel=1
 pkgdesc="Bioconductor facilities for parallel evaluation"
-url="https://bioconductor.org/packages/release/bioc/html/${_bc_name}.html"
-arch=("x86_64")
-license=('Artistic-2.0')
-depends=('r' 'r-snow' 'r-bh' 'r-futilelogger' 'r-utils')
-source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bc_name}_${pkgver}.tar.gz")
-sha1sums=('ab035aff4cb307d0f13639d5e50818499556b737')
+url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
+arch=(i686 x86_64)
+license=('GPL2' 'GPL3')
+depends=('r' 'r-futile.logger' 'r-snow' 'r-bh')
+makedepends=('gcc>=4.3')
+optdepends=('r-biocgenerics' 'r-foreach' 'r-batchjobs' 'r-bbmisc' 'r-doparallel' 'r-rmpi' 'r-genomicranges' 'r-rnaseqdata.hnrnpc.bam.chr14' 'r-txdb.hsapiens.ucsc.hg19.knowngene' 'r-variantannotation' 'r-rsamtools' 'r-genomicalignments' 'r-shortread' 'r-codetools' 'r-runit' 'r-biocstyle' 'r-knitr' 'r-batchtools' 'r-data.table')
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
+sha1sums=('99be1cf32bb153b958c6af5834e89f541b23876d')
+
+build(){
+  cd "${srcdir}"
+
+  R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l $srcdir
+}
 
 package() {
- mkdir -p $pkgdir/usr/lib/R/library
- cd $srcdir
+  cd "${srcdir}"
 
- R CMD INSTALL -l $pkgdir/usr/lib/R/library ./${_bc_name}
+  install -dm0755 "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "$_bcname" "$pkgdir/usr/lib/R/library"
 }
+