upgpkg: r-biocparallel 1.30.0-1

upstream release

upstream release

2 files changed, 38 insertions, 8 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 1db3d0cdd1e9..446224d84e85 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
 pkgbase = r-biocparallel
 	pkgdesc = Bioconductor facilities for parallel evaluation
-	pkgver = 1.28.3
+	pkgver = 1.30.0
 	pkgrel = 1
 	url = https://bioconductor.org/packages/release/bioc/html/BiocParallel.html
 	arch = i686
@@ -30,7 +30,7 @@ pkgbase = r-biocparallel
 	optdepends = r-knitr
 	optdepends = r-batchtools
 	optdepends = r-data.table
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.28.3.tar.gz
-	sha256sums = 172dc143e5d1f8427bbad1b8dbb95730ac3b53dcb32274a847f81b43453d7752
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.30.0.tar.gz
+	sha256sums = 6bd54210c6ce1eb2f7d7d104317c3f808f9aabc99806fa491d9de5db69ce314f
 
 pkgname = r-biocparallel
diff --git a/PKGBUILD b/PKGBUILD
index dab7eeb60538..95c3a4a2fc16 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,8 +1,9 @@
+# Maintainer: peippo <christoph+aur@christophfink.com>
 # Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
 # Contributor: Grey Christoforo <first name at last name dot net>
 
 _bcname=BiocParallel
-_bcver=1.28.3
+_bcver=1.30.0
 pkgname=r-${_bcname,,}
 pkgver=${_bcver//[:-]/.}
 pkgrel=1
@@ -10,10 +11,35 @@ pkgdesc="Bioconductor facilities for parallel evaluation"
 arch=(i686 x86_64)
 url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
 license=(GPL2 GPL3)
-depends=('r>=3.5.0' r-futile.logger r-snow r-bh)
-optdepends=(r-biocgenerics r-foreach r-batchjobs r-bbmisc r-doparallel r-rmpi r-genomicranges r-rnaseqdata.hnrnpc.bam.chr14 r-txdb.hsapiens.ucsc.hg19.knowngene r-variantannotation r-rsamtools r-genomicalignments r-shortread r-codetools r-runit r-biocstyle r-knitr r-batchtools r-data.table)
+depends=(
+    "r>=3.5.0"
+	r-futile.logger
+	r-snow
+	r-bh
+)
+optdepends=(
+    r-biocgenerics
+	r-foreach
+	r-batchjobs
+	r-bbmisc
+	r-doparallel
+	r-rmpi
+	r-genomicranges
+	r-rnaseqdata.hnrnpc.bam.chr14
+	r-txdb.hsapiens.ucsc.hg19.knowngene
+	r-variantannotation
+	r-rsamtools
+	r-genomicalignments
+	r-shortread
+	r-codetools
+	r-runit
+	r-biocstyle
+	r-knitr
+	r-batchtools
+	r-data.table
+)
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-sha256sums=('172dc143e5d1f8427bbad1b8dbb95730ac3b53dcb32274a847f81b43453d7752')
+sha256sums=("6bd54210c6ce1eb2f7d7d104317c3f808f9aabc99806fa491d9de5db69ce314f")
 
 build() {
   R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
@@ -21,6 +47,10 @@ build() {
 
 package() {
   install -dm0755 "${pkgdir}/usr/lib/R/library"
-
   cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
+
+  if [[ -f "${_cranname}/LICENSE" ]]; then
+    install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+  fi
+
 }