add r-biodb

2 files changed, 94 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..6b7297059063
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,39 @@
+pkgbase = r-biodb
+	pkgdesc = biodb, a library and a development framework for connecting to chemical and biological databases
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/biodb
+	arch = x86_64
+	license = AGPL
+	depends = r
+	depends = r-biocfilecache
+	depends = r-chk
+	depends = r-jsonlite
+	depends = r-lgr
+	depends = r-lifecycle
+	depends = r-openssl
+	depends = r-plyr
+	depends = r-progress
+	depends = r-r6
+	depends = r-rappdirs
+	depends = r-rcpp
+	depends = r-rcurl
+	depends = r-rsqlite
+	depends = r-stringr
+	depends = r-testthat
+	depends = r-withr
+	depends = r-xml
+	depends = r-yaml
+	optdepends = r-biocstyle
+	optdepends = r-covr
+	optdepends = r-devtools
+	optdepends = r-git2r
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-roxygen2
+	optdepends = r-testthat
+	optdepends = r-xml2
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/biodb_1.4.0.tar.gz
+	sha256sums = d1e225bc61f3384acc68e73d0a85b74fe3336a51ac53bd62b8a9a5bb92b0200a
+
+pkgname = r-biodb
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..85382e0e29bb
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,55 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=biodb
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=1.4.0
+pkgrel=1
+pkgdesc='biodb, a library and a development framework for connecting to chemical and biological databases'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('AGPL')
+depends=(
+  r
+  r-biocfilecache
+  r-chk
+  r-jsonlite
+  r-lgr
+  r-lifecycle
+  r-openssl
+  r-plyr
+  r-progress
+  r-r6
+  r-rappdirs
+  r-rcpp
+  r-rcurl
+  r-rsqlite
+  r-stringr
+  r-testthat
+  r-withr
+  r-xml
+  r-yaml
+)
+optdepends=(
+  r-biocstyle
+  r-covr
+  r-devtools
+  r-git2r
+  r-knitr
+  r-rmarkdown
+  r-roxygen2
+  r-testthat
+  r-xml2
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('d1e225bc61f3384acc68e73d0a85b74fe3336a51ac53bd62b8a9a5bb92b0200a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: