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| author | BioArchLinuxBot | 2024-03-12 12:03:36 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2024-03-12 12:03:36 +0000 |
| commit | d51a10ba0f9f6db0fe2a2a597a922598b8253bcb (patch) | |
| tree | 8305ca020226a1788554d3fab005c7ac48c3e854 | |
| parent | 12f6b1f51d77e2550e0d1f5ae059d6b15a803756 (diff) | |
| download | aur-d51a10ba0f9f6db0fe2a2a597a922598b8253bcb.tar.gz | |
[lilac] updated to 1.4.4-1
| -rw-r--r-- | .SRCINFO | 13 | ||||
| -rw-r--r-- | PKGBUILD | 18 | ||||
| -rw-r--r-- | fix-tests.patch | 26 |
3 files changed, 47 insertions, 10 deletions
@@ -1,10 +1,10 @@ pkgbase = r-bionar pkgdesc = Biological Network Analysis in R - pkgver = 1.4.1 + pkgver = 1.4.4 pkgrel = 1 url = https://bioconductor.org/packages/BioNAR arch = any - license = Artistic2.0 + license = Artistic-2.0 checkdepends = r-igraphdata checkdepends = r-testthat checkdepends = r-vdiffr @@ -40,8 +40,11 @@ pkgbase = r-bionar optdepends = r-rmarkdown optdepends = r-testthat optdepends = r-vdiffr - source = https://bioconductor.org/packages/release/bioc/src/contrib/BioNAR_1.4.1.tar.gz - md5sums = cce2273d564095b70d5b18aa6d134612 - b2sums = 38bb15d26fa8dfa321e9ea801f949c39ac51189faf62aaa703e3ee2431261771e3485562f4b6ce6fe2311bbeec25875fd2b5a108911c84f16942805bb28752ae + source = https://bioconductor.org/packages/release/bioc/src/contrib/BioNAR_1.4.4.tar.gz + source = fix-tests.patch + md5sums = 60ea801489d5db3a2bb2e00d1acc1056 + md5sums = 4a0d1366b4a7d786d07d1553c9a7899e + b2sums = 9a2a1a98ccff8e9d8054295f5b53321dcd03f9d996a1931f4e6a51c98af378ac2d0e0ef9a1ff51e43b15ff795ac523305037197d6b0e63ddd2f4aeeb28f6ff34 + b2sums = 5bcc25f82c45ce8442351f73a851f34bf2c76b286dd708141882f928876d02fba213e8760146cd3115d298985aa062fb67d9a5d89ea7a62687d65fdfb3349a84 pkgname = r-bionar @@ -1,14 +1,14 @@ # Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> _pkgname=BioNAR -_pkgver=1.4.1 +_pkgver=1.4.4 pkgname=r-${_pkgname,,} pkgver=${_pkgver//-/.} pkgrel=1 pkgdesc="Biological Network Analysis in R" arch=(any) url="https://bioconductor.org/packages/$_pkgname" -license=(Artistic2.0) +license=('Artistic-2.0') depends=( r-annotationdbi r-clustercons @@ -50,9 +50,17 @@ optdepends=( r-testthat r-vdiffr ) -source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -md5sums=('cce2273d564095b70d5b18aa6d134612') -b2sums=('38bb15d26fa8dfa321e9ea801f949c39ac51189faf62aaa703e3ee2431261771e3485562f4b6ce6fe2311bbeec25875fd2b5a108911c84f16942805bb28752ae') +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz" + "fix-tests.patch") +md5sums=('60ea801489d5db3a2bb2e00d1acc1056' + '4a0d1366b4a7d786d07d1553c9a7899e') +b2sums=('9a2a1a98ccff8e9d8054295f5b53321dcd03f9d996a1931f4e6a51c98af378ac2d0e0ef9a1ff51e43b15ff795ac523305037197d6b0e63ddd2f4aeeb28f6ff34' + '5bcc25f82c45ce8442351f73a851f34bf2c76b286dd708141882f928876d02fba213e8760146cd3115d298985aa062fb67d9a5d89ea7a62687d65fdfb3349a84') + +prepare() { + # fix test snapshots + patch -Np1 -i fix-tests.patch +} build() { mkdir build diff --git a/fix-tests.patch b/fix-tests.patch new file mode 100644 index 000000000000..442ed661adc3 --- /dev/null +++ b/fix-tests.patch @@ -0,0 +1,26 @@ +diff --git a/BioNAR/tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg b/BioNAR/tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg +index eacd23f..4feb787 100644 +--- a/BioNAR/tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg ++++ b/BioNAR/tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg +@@ -18,7 +18,7 @@ + </clipPath> + </defs> + <g clip-path='url(#cpMC4wMHw3MjAuMDB8MC4wMHw1NzYuMDA=)'> +-<rect x='0.00' y='0.00' width='720.00' height='576.00' style='stroke-width: 1.07; stroke: #FFFFFF; fill: #FFFFFF;' /> ++<rect x='0.000000000000064' y='0.00' width='720.00' height='576.00' style='stroke-width: 1.07; stroke: #FFFFFF; fill: #FFFFFF;' /> + </g> + <defs> + <clipPath id='cpNTQuOTF8NzE0LjUyfDIyLjc4fDUzMC4zMw=='> +diff --git a/BioNAR/tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg b/BioNAR/tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg +index de47e4c..7ef78e1 100644 +--- a/BioNAR/tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg ++++ b/BioNAR/tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg +@@ -18,7 +18,7 @@ + </clipPath> + </defs> + <g clip-path='url(#cpMC4wMHw3MjAuMDB8MC4wMHw1NzYuMDA=)'> +-<rect x='0.00' y='0.00' width='720.00' height='576.00' style='stroke-width: 1.07; stroke: #FFFFFF; fill: #FFFFFF;' /> ++<rect x='0.000000000000064' y='0.00' width='720.00' height='576.00' style='stroke-width: 1.07; stroke: #FFFFFF; fill: #FFFFFF;' /> + </g> + <defs> + <clipPath id='cpNTQuOTF8NzE0LjUyfDIyLjc4fDUzMC4zMw=='> |