add r-biosigner

2 files changed, 68 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..25807a3cc388
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,26 @@
+pkgbase = r-biosigner
+	pkgdesc = Signature discovery from omics data
+	pkgver = 1.24.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/biosigner
+	arch = any
+	license = CeCILL
+	depends = r
+	depends = r-biobase
+	depends = r-e1071
+	depends = r-multidataset
+	depends = r-randomforest
+	depends = r-ropls
+	optdepends = r-biocgenerics
+	optdepends = r-biocstyle
+	optdepends = r-biomark
+	optdepends = r-golubesets
+	optdepends = r-hu6800.db
+	optdepends = r-knitr
+	optdepends = r-omicade4
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/biosigner_1.24.0.tar.gz
+	sha256sums = 8ec4a97a1f1fe8f35e59ea071a0031a1f09090ee691665578b0638f0a9458287
+
+pkgname = r-biosigner
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..42ca5bcb4a45
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,42 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=biosigner
+_pkgver=1.24.0
+pkgname=r-${_pkgname,,}
+pkgver=1.24.0
+pkgrel=1
+pkgdesc='Signature discovery from omics data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('CeCILL')
+depends=(
+  r
+  r-biobase
+  r-e1071
+  r-multidataset
+  r-randomforest
+  r-ropls
+)
+optdepends=(
+  r-biocgenerics
+  r-biocstyle
+  r-biomark
+  r-golubesets
+  r-hu6800.db
+  r-knitr
+  r-omicade4
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('8ec4a97a1f1fe8f35e59ea071a0031a1f09090ee691665578b0638f0a9458287')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: