upgpkg: r-biostrings 2.70.1-1

upstream release

2 files changed, 11 insertions, 7 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 1bbf8ea28c26..91ea6fd6f491 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
 pkgbase = r-biostrings
 	pkgdesc = Efficient manipulation of biological strings
-	pkgver = 2.68.1
+	pkgver = 2.70.1
 	pkgrel = 1
 	url = https://bioconductor.org/packages/release/bioc/html/Biostrings.html
 	arch = i686
@@ -15,17 +15,19 @@ pkgbase = r-biostrings
 	depends = r-xvector>=0.37.1
 	optdepends = r-affy>=1.41.3
 	optdepends = r-affydata>=1.11.5
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome>=1.13.14
 	optdepends = r-bsgenome.celegans.ucsc.ce2>=1.3.11
 	optdepends = r-bsgenome.dmelanogaster.ucsc.dm3>=1.3.11
 	optdepends = r-bsgenome.hsapiens.ucsc.hg18
-	optdepends = r-bsgenome>=1.13.14
 	optdepends = r-drosophila2probe
 	optdepends = r-genomicfeatures>=1.3.14
 	optdepends = r-hgu133aprobe
 	optdepends = r-hgu95av2cdf
 	optdepends = r-hgu95av2probe
+	optdepends = r-knitr
 	optdepends = r-runit
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/Biostrings_2.68.1.tar.gz
-	b2sums = 82478d065bb98544bd4aadc35a18feeed9b6e016e89384dfedc9473d3e2fafbbb8618977efefa21c337902087ef967526edf1805b40ebc9c365cde83ede9c7eb
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/Biostrings_2.70.1.tar.gz
+	b2sums = 858bd8c07272385ba65252e6da988b3b8592f9f3aeebc437d65524c328d500605baf1fb3263459732a563f53e48512b86652e34ed6ad8e497b8d52eddd4a0f6b
 
 pkgname = r-biostrings
diff --git a/PKGBUILD b/PKGBUILD
index 542319ba2aa9..c2fa146abd25 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -3,7 +3,7 @@
 # Contributor: Grey Christoforo <first name at last name dot net>
 
 _bcname=Biostrings
-_bcver=2.68.1
+_bcver=2.70.1
 
 pkgname=r-${_bcname,,}
 pkgdesc="Efficient manipulation of biological strings"
@@ -26,20 +26,22 @@ depends=(
 optdepends=(
     "r-affy>=1.41.3"
     "r-affydata>=1.11.5"
+    "r-biocstyle"
+    "r-bsgenome>=1.13.14"
     "r-bsgenome.celegans.ucsc.ce2>=1.3.11"
     "r-bsgenome.dmelanogaster.ucsc.dm3>=1.3.11"
     "r-bsgenome.hsapiens.ucsc.hg18"
-    "r-bsgenome>=1.13.14"
     "r-drosophila2probe"
     "r-genomicfeatures>=1.3.14"
     "r-hgu133aprobe"
     "r-hgu95av2cdf"
     "r-hgu95av2probe"
+    "r-knitr"
     "r-runit"
 )
 
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-b2sums=("82478d065bb98544bd4aadc35a18feeed9b6e016e89384dfedc9473d3e2fafbbb8618977efefa21c337902087ef967526edf1805b40ebc9c365cde83ede9c7eb")
+b2sums=('858bd8c07272385ba65252e6da988b3b8592f9f3aeebc437d65524c328d500605baf1fb3263459732a563f53e48512b86652e34ed6ad8e497b8d52eddd4a0f6b')
 
 build() {
   R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"