upgpkg: r-biostrings 2.68.1-1

upstream release

2 files changed, 42 insertions, 38 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 2628631ad1ea..1bbf8ea28c26 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,31 +1,31 @@
 pkgbase = r-biostrings
 	pkgdesc = Efficient manipulation of biological strings
-	pkgver = 2.66.0
-	pkgrel = 2
+	pkgver = 2.68.1
+	pkgrel = 1
 	url = https://bioconductor.org/packages/release/bioc/html/Biostrings.html
 	arch = i686
 	arch = x86_64
 	license = Artistic2.0
 	depends = r>=4.0.0
 	depends = r-biocgenerics>=0.37.0
-	depends = r-s4vectors>=0.27.12
-	depends = r-iranges>=2.23.9
-	depends = r-xvector>=0.29.2
-	depends = r-genomeinfodb
 	depends = r-crayon
-	optdepends = r-bsgenome
-	optdepends = r-bsgenome.celegans.ucsc.ce2
-	optdepends = r-bsgenome.dmelanogaster.ucsc.dm3
+	depends = r-genomeinfodb
+	depends = r-iranges>=2.31.2
+	depends = r-s4vectors>=0.27.12
+	depends = r-xvector>=0.37.1
+	optdepends = r-affy>=1.41.3
+	optdepends = r-affydata>=1.11.5
+	optdepends = r-bsgenome.celegans.ucsc.ce2>=1.3.11
+	optdepends = r-bsgenome.dmelanogaster.ucsc.dm3>=1.3.11
 	optdepends = r-bsgenome.hsapiens.ucsc.hg18
+	optdepends = r-bsgenome>=1.13.14
 	optdepends = r-drosophila2probe
-	optdepends = r-hgu95av2probe
+	optdepends = r-genomicfeatures>=1.3.14
 	optdepends = r-hgu133aprobe
-	optdepends = r-genomicfeatures
 	optdepends = r-hgu95av2cdf
-	optdepends = r-affy
-	optdepends = r-affydata
+	optdepends = r-hgu95av2probe
 	optdepends = r-runit
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/Biostrings_2.66.0.tar.gz
-	sha256sums = 7312c508bc2fe6ea3da75edd621b41a35929f9dbdca16d25eb3724ca2cd206fd
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/Biostrings_2.68.1.tar.gz
+	b2sums = 82478d065bb98544bd4aadc35a18feeed9b6e016e89384dfedc9473d3e2fafbbb8618977efefa21c337902087ef967526edf1805b40ebc9c365cde83ede9c7eb
 
 pkgname = r-biostrings
diff --git a/PKGBUILD b/PKGBUILD
index acf8ea313127..542319ba2aa9 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -3,39 +3,43 @@
 # Contributor: Grey Christoforo <first name at last name dot net>
 
 _bcname=Biostrings
-_bcver=2.66.0
+_bcver=2.68.1
+
 pkgname=r-${_bcname,,}
-pkgver=${_bcver//[:-]/.}
-pkgrel=2
 pkgdesc="Efficient manipulation of biological strings"
-arch=(i686 x86_64)
 url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
+pkgver=${_bcver//[:-]/.}
+pkgrel=1
+
+arch=(i686 x86_64)
 license=(Artistic2.0)
+
 depends=(
     "r>=4.0.0"
-	"r-biocgenerics>=0.37.0"
-	"r-s4vectors>=0.27.12"
-	"r-iranges>=2.23.9"
-	"r-xvector>=0.29.2"
-	r-genomeinfodb
-	r-crayon
+    "r-biocgenerics>=0.37.0"
+    "r-crayon"
+    "r-genomeinfodb"
+    "r-iranges>=2.31.2"
+    "r-s4vectors>=0.27.12"
+    "r-xvector>=0.37.1"
 )
 optdepends=(
-    r-bsgenome
-	r-bsgenome.celegans.ucsc.ce2
-	r-bsgenome.dmelanogaster.ucsc.dm3
-	r-bsgenome.hsapiens.ucsc.hg18
-	r-drosophila2probe
-	r-hgu95av2probe
-	r-hgu133aprobe
-	r-genomicfeatures
-	r-hgu95av2cdf
-	r-affy
-	r-affydata
-	r-runit
+    "r-affy>=1.41.3"
+    "r-affydata>=1.11.5"
+    "r-bsgenome.celegans.ucsc.ce2>=1.3.11"
+    "r-bsgenome.dmelanogaster.ucsc.dm3>=1.3.11"
+    "r-bsgenome.hsapiens.ucsc.hg18"
+    "r-bsgenome>=1.13.14"
+    "r-drosophila2probe"
+    "r-genomicfeatures>=1.3.14"
+    "r-hgu133aprobe"
+    "r-hgu95av2cdf"
+    "r-hgu95av2probe"
+    "r-runit"
 )
+
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-sha256sums=('7312c508bc2fe6ea3da75edd621b41a35929f9dbdca16d25eb3724ca2cd206fd')
+b2sums=("82478d065bb98544bd4aadc35a18feeed9b6e016e89384dfedc9473d3e2fafbbb8618977efefa21c337902087ef967526edf1805b40ebc9c365cde83ede9c7eb")
 
 build() {
   R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"