add r-bnem

2 files changed, 76 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..c78b2abd2b86
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,30 @@
+pkgbase = r-bnem
+	pkgdesc = Training of logical models from indirect measurements of perturbation experiments
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/bnem
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-affy
+	depends = r-binom
+	depends = r-biobase
+	depends = r-cellnoptr
+	depends = r-epinem
+	depends = r-flexclust
+	depends = r-graph
+	depends = r-limma
+	depends = r-matrixstats
+	depends = r-mnem
+	depends = r-rcolorbrewer
+	depends = r-rgraphviz
+	depends = r-rmarkdown
+	depends = r-snowfall
+	depends = r-sva
+	depends = r-vsn
+	optdepends = r-biocgenerics
+	optdepends = r-knitr
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/bnem_1.4.0.tar.gz
+	sha256sums = 22a4bfa37f0eb91f43aadfe46d6b4a7760b6a11fef9df074d249e0047c9f03e2
+
+pkgname = r-bnem
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..cb5927b6b8d7
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,46 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=bnem
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=1.4.0
+pkgrel=1
+pkgdesc='Training of logical models from indirect measurements of perturbation experiments'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-affy
+  r-binom
+  r-biobase
+  r-cellnoptr
+  r-epinem
+  r-flexclust
+  r-graph
+  r-limma
+  r-matrixstats
+  r-mnem
+  r-rcolorbrewer
+  r-rgraphviz
+  r-rmarkdown
+  r-snowfall
+  r-sva
+  r-vsn
+)
+optdepends=(
+  r-biocgenerics
+  r-knitr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('22a4bfa37f0eb91f43aadfe46d6b4a7760b6a11fef9df074d249e0047c9f03e2')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: