Version 1.6.0

2 files changed, 101 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..ad9084fdc417
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,39 @@
+pkgbase = r-borealis
+	pkgdesc = Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/borealis
+	arch = any
+	license = GPL-3.0-only
+	checkdepends = r-biocgenerics
+	checkdepends = r-runit
+	depends = r-biobase
+	depends = r-bsseq
+	depends = r-cowplot
+	depends = r-doparallel
+	depends = r-dplyr
+	depends = r-dss
+	depends = r-foreach
+	depends = r-gamlss
+	depends = r-gamlss.dist
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-plyr
+	depends = r-purrr
+	depends = r-r.utils
+	depends = r-rlang
+	depends = r-snow
+	optdepends = r-annotatr
+	optdepends = r-biocgenerics
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-org.hs.eg.db
+	optdepends = r-rmarkdown
+	optdepends = r-runit
+	optdepends = r-tidyr
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/borealis_1.6.0.tar.gz
+	md5sums = 8b6aa71e360f97c8460bbf5ec3c95d91
+	b2sums = 5dd874d1d3fa0da69bad3c0a63f30481442c1ad8a65c28337a947851035a41ab240c0cfc1681ea45f57757b234457289a8e4028564c4b2b1c372ced81935a9cb
+
+pkgname = r-borealis
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..4f80bffcb679
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,62 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=borealis
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution"
+arch=(any)
+url="https://bioconductor.org/packages/$_pkgname"
+license=('GPL-3.0-only')
+depends=(
+  r-biobase
+  r-bsseq
+  r-cowplot
+  r-doparallel
+  r-dplyr
+  r-dss
+  r-foreach
+  r-gamlss
+  r-gamlss.dist
+  r-genomicranges
+  r-ggplot2
+  r-plyr
+  r-purrr
+  r-r.utils
+  r-rlang
+  r-snow
+)
+checkdepends=(
+  r-biocgenerics
+  r-runit
+)
+optdepends=(
+  r-annotatr
+  r-biocgenerics
+  r-biocstyle
+  r-knitr
+  r-org.hs.eg.db
+  r-rmarkdown
+  r-runit
+  r-tidyr
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('8b6aa71e360f97c8460bbf5ec3c95d91')
+b2sums=('5dd874d1d3fa0da69bad3c0a63f30481442c1ad8a65c28337a947851035a41ab240c0cfc1681ea45f57757b234457289a8e4028564c4b2b1c372ced81935a9cb')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}