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author | Sukanka | 2022-06-06 05:26:28 +0800 |
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committer | Sukanka | 2022-06-06 05:26:28 +0800 |
commit | 410813c7fbedb1ac9b37936e1d9f8b99e3153a7b (patch) | |
tree | f395c098076b0e7c7367426131ca776f9706df17 | |
download | aur-410813c7fbedb1ac9b37936e1d9f8b99e3153a7b.tar.gz |
add r-bsgenome
-rw-r--r-- | .SRCINFO | 37 | ||||
-rw-r--r-- | PKGBUILD | 53 |
2 files changed, 90 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..76d3aad712cc --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,37 @@ +pkgbase = r-bsgenome + pkgdesc = Software infrastructure for efficient representation of full genomes and their SNPs + pkgver = 1.64.0 + pkgrel = 1 + url = https://bioconductor.org/packages/BSgenome + arch = any + license = Artistic2.0 + depends = r + depends = r-biocgenerics + depends = r-biostrings + depends = r-genomeinfodb + depends = r-genomicranges + depends = r-iranges + depends = r-matrixstats + depends = r-rsamtools + depends = r-rtracklayer + depends = r-s4vectors + depends = r-xvector + optdepends = r-biobase + optdepends = r-biocmanager + optdepends = r-bsgenome.celegans.ucsc.ce2 + optdepends = r-bsgenome.hsapiens.ncbi.grch38 + optdepends = r-bsgenome.hsapiens.ucsc.hg38 + optdepends = r-bsgenome.hsapiens.ucsc.hg38.masked + optdepends = r-bsgenome.mmusculus.ucsc.mm10 + optdepends = r-bsgenome.rnorvegicus.ucsc.rn5 + optdepends = r-bsgenome.scerevisiae.ucsc.saccer1 + optdepends = r-hgu95av2probe + optdepends = r-runit + optdepends = r-snplocs.hsapiens.dbsnp144.grch38 + optdepends = r-txdb.hsapiens.ucsc.hg38.knowngene + optdepends = r-txdb.mmusculus.ucsc.mm10.knowngene + optdepends = r-xtrasnplocs.hsapiens.dbsnp144.grch38 + source = https://bioconductor.org/packages/release/bioc/src/contrib/BSgenome_1.64.0.tar.gz + sha256sums = ace392a9db183effb8a55c1f74719ef00dee5ea2da2af6f383af77e354cdf89d + +pkgname = r-bsgenome diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..908fa8b1ba78 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,53 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=BSgenome +_pkgver=1.64.0 +pkgname=r-${_pkgname,,} +pkgver=1.64.0 +pkgrel=1 +pkgdesc='Software infrastructure for efficient representation of full genomes and their SNPs' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-biocgenerics + r-biostrings + r-genomeinfodb + r-genomicranges + r-iranges + r-matrixstats + r-rsamtools + r-rtracklayer + r-s4vectors + r-xvector +) +optdepends=( + r-biobase + r-biocmanager + r-bsgenome.celegans.ucsc.ce2 + r-bsgenome.hsapiens.ncbi.grch38 + r-bsgenome.hsapiens.ucsc.hg38 + r-bsgenome.hsapiens.ucsc.hg38.masked + r-bsgenome.mmusculus.ucsc.mm10 + r-bsgenome.rnorvegicus.ucsc.rn5 + r-bsgenome.scerevisiae.ucsc.saccer1 + r-hgu95av2probe + r-runit + r-snplocs.hsapiens.dbsnp144.grch38 + r-txdb.hsapiens.ucsc.hg38.knowngene + r-txdb.mmusculus.ucsc.mm10.knowngene + r-xtrasnplocs.hsapiens.dbsnp144.grch38 +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('ace392a9db183effb8a55c1f74719ef00dee5ea2da2af6f383af77e354cdf89d') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |