Version 1.4.0

2 files changed, 85 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..222f71d7f8ee
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,31 @@
+pkgbase = r-cardelino
+	pkgdesc = Clone Identification from Single Cell Data
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/cardelino
+	arch = any
+	license = GPL3
+	checkdepends = r-testthat
+	depends = r-combinat
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-ggtree
+	depends = r-matrixstats
+	depends = r-pheatmap
+	depends = r-s4vectors
+	depends = r-snpstats
+	depends = r-variantannotation
+	depends = r-vcfr
+	optdepends = r-biocstyle
+	optdepends = r-foreach
+	optdepends = r-knitr
+	optdepends = r-pcamethods
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-vgam
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/cardelino_1.4.0.tar.gz
+	md5sums = 363c06547419f29e1cdfe473651e1861
+	sha256sums = f6ed2a646b833f4a63b0641731ce2c1dbc4718d76d7418c0878acb00561b8d78
+
+pkgname = r-cardelino
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..4f2f6c45d1fd
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=cardelino
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Clone Identification from Single Cell Data"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-combinat
+  r-genomeinfodb
+  r-genomicranges
+  r-ggplot2
+  r-ggtree
+  r-matrixstats
+  r-pheatmap
+  r-s4vectors
+  r-snpstats
+  r-variantannotation
+  r-vcfr
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-foreach
+  r-knitr
+  r-pcamethods
+  r-rmarkdown
+  r-testthat
+  r-vgam
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('363c06547419f29e1cdfe473651e1861')
+sha256sums=('f6ed2a646b833f4a63b0641731ce2c1dbc4718d76d7418c0878acb00561b8d78')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}