add r-ccfindr

2 files changed, 72 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..63caafaf9960
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,28 @@
+pkgbase = r-ccfindr
+	pkgdesc = Cancer Clone Finder
+	pkgver = 1.16.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/ccfindR
+	arch = x86_64
+	license = GPL
+	depends = gsl
+	depends = r
+	depends = r-ape
+	depends = r-gtools
+	depends = r-irlba
+	depends = r-rcolorbrewer
+	depends = r-rcpp
+	depends = r-rcppeigen
+	depends = r-rdpack
+	depends = r-rmpi
+	depends = r-rtsne
+	depends = r-s4vectors
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/ccfindR_1.16.0.tar.gz
+	sha256sums = 3bdaffd17816f6facfa99a8e6ef7c2948fa2ff1a3e863a267960c38e1128e5bd
+
+pkgname = r-ccfindr
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..a34b12ba0cd4
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,44 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=ccfindR
+_pkgver=1.16.0
+pkgname=r-${_pkgname,,}
+pkgver=1.16.0
+pkgrel=1
+pkgdesc='Cancer Clone Finder'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  gsl
+  r
+  r-ape
+  r-gtools
+  r-irlba
+  r-rcolorbrewer
+  r-rcpp
+  r-rcppeigen
+  r-rdpack
+  r-rmpi
+  r-rtsne
+  r-s4vectors
+  r-singlecellexperiment
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('3bdaffd17816f6facfa99a8e6ef7c2948fa2ff1a3e863a267960c38e1128e5bd')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: